Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2026 | 3' | -62.1 | NC_001347.2 | + | 53732 | 0.7 | 0.502666 |
Target: 5'- gGGUCACAGCCgcguGCCGcGGGuG-CGCGCa -3' miRNA: 3'- -UCGGUGUCGG----CGGC-CUCuCuGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 76626 | 0.7 | 0.530044 |
Target: 5'- cGGCUGCGGCCGCgGcGGAGGCcgaaGCgGCCu -3' miRNA: 3'- -UCGGUGUCGGCGgCcUCUCUG----CG-CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 1759 | 0.7 | 0.539293 |
Target: 5'- cGCUGCAGaCGCCGGGcAGGCGacugcaGCCg -3' miRNA: 3'- uCGGUGUCgGCGGCCUcUCUGCg-----CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 125313 | 0.7 | 0.520854 |
Target: 5'- cGUCGCAGCCgcGCCGGccucGAGcauguACGCGCUu -3' miRNA: 3'- uCGGUGUCGG--CGGCCu---CUC-----UGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 184499 | 0.7 | 0.511727 |
Target: 5'- cGGCC-CGGCCGCCGcgccguguGAGAGuuccaGgGCCg -3' miRNA: 3'- -UCGGuGUCGGCGGC--------CUCUCug---CgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 79037 | 0.7 | 0.539293 |
Target: 5'- gAGCUgauuuGCAGCCGC--GAGaAGGCGCGUCg -3' miRNA: 3'- -UCGG-----UGUCGGCGgcCUC-UCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 185129 | 0.7 | 0.493677 |
Target: 5'- cGGCgcgaGCAGCCGCCGGGcGGcACGgGCa -3' miRNA: 3'- -UCGg---UGUCGGCGGCCUcUC-UGCgCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 168196 | 0.69 | 0.586254 |
Target: 5'- cGGCCACGGCgCGacaauugaCGuAGGGcCGCGCCu -3' miRNA: 3'- -UCGGUGUCG-GCg-------GCcUCUCuGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 73723 | 0.69 | 0.557949 |
Target: 5'- cGGgCACcGCCGCCGGAG--GCGCGg- -3' miRNA: 3'- -UCgGUGuCGGCGGCCUCucUGCGCgg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 99140 | 0.69 | 0.594803 |
Target: 5'- aAGCCGCGGCgcgcguaCGCC-GAGAcccGACGCGgCg -3' miRNA: 3'- -UCGGUGUCG-------GCGGcCUCU---CUGCGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 156493 | 0.69 | 0.567346 |
Target: 5'- cAGUCACAGCgGCagCGGuccgucccuGuGGCGCGCCc -3' miRNA: 3'- -UCGGUGUCGgCG--GCCu--------CuCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 65511 | 0.69 | 0.575837 |
Target: 5'- cGCCggACuGCCGCCcGAGcugaagcAGACGCGCg -3' miRNA: 3'- uCGG--UGuCGGCGGcCUC-------UCUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 81670 | 0.68 | 0.624372 |
Target: 5'- uGCCACucauccucgGGCaCGCCGagcGAGAG-CGCGCa -3' miRNA: 3'- uCGGUG---------UCG-GCGGC---CUCUCuGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 136286 | 0.68 | 0.614819 |
Target: 5'- cGCCGCGGCCcaugcCCGGcacGGGGcuCGCGCUc -3' miRNA: 3'- uCGGUGUCGGc----GGCC---UCUCu-GCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 195834 | 0.68 | 0.614819 |
Target: 5'- uGUCugGGCCGCgCuucGAGGCGUGCCc -3' miRNA: 3'- uCGGugUCGGCG-GccuCUCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 164846 | 0.68 | 0.617684 |
Target: 5'- cGCCGCAGCUGUaggacggugguaccgCGGAcgaagaaGAGGC-CGCCg -3' miRNA: 3'- uCGGUGUCGGCG---------------GCCU-------CUCUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 38414 | 0.68 | 0.605278 |
Target: 5'- uGCCGCucGCCGCUGGcGGcGACGuCGUCc -3' miRNA: 3'- uCGGUGu-CGGCGGCC-UCuCUGC-GCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 2444 | 0.68 | 0.614819 |
Target: 5'- cAGUgGgAGCgGCCGcgcuGGGACGCGCUg -3' miRNA: 3'- -UCGgUgUCGgCGGCcu--CUCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 13531 | 0.68 | 0.605278 |
Target: 5'- cGGCCcgGGCCGCCgugcuGGAGGGcCGCcCCa -3' miRNA: 3'- -UCGGugUCGGCGG-----CCUCUCuGCGcGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 193894 | 0.68 | 0.613865 |
Target: 5'- gAGCCcguCAuGCCGCUGGGcgaaauuGAGG-GCGCCg -3' miRNA: 3'- -UCGGu--GU-CGGCGGCCU-------CUCUgCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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