miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 80502 0.68 0.624372
Target:  5'- cGGcCCACAcGCCG-UGGAaGGGCGCGCa -3'
miRNA:   3'- -UC-GGUGU-CGGCgGCCUcUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 136286 0.68 0.614819
Target:  5'- cGCCGCGGCCcaugcCCGGcacGGGGcuCGCGCUc -3'
miRNA:   3'- uCGGUGUCGGc----GGCC---UCUCu-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 164846 0.68 0.617684
Target:  5'- cGCCGCAGCUGUaggacggugguaccgCGGAcgaagaaGAGGC-CGCCg -3'
miRNA:   3'- uCGGUGUCGGCG---------------GCCU-------CUCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 195834 0.68 0.614819
Target:  5'- uGUCugGGCCGCgCuucGAGGCGUGCCc -3'
miRNA:   3'- uCGGugUCGGCG-GccuCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2444 0.68 0.614819
Target:  5'- cAGUgGgAGCgGCCGcgcuGGGACGCGCUg -3'
miRNA:   3'- -UCGgUgUCGgCGGCcu--CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 25890 0.68 0.633929
Target:  5'- cGCUACGagacGCCGCUGGAac-GCGCGCUu -3'
miRNA:   3'- uCGGUGU----CGGCGGCCUcucUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 114505 0.68 0.632974
Target:  5'- cGCCACAccgGCCuGCCGGucguuuuccccgaAGAccuGGCGCGCa -3'
miRNA:   3'- uCGGUGU---CGG-CGGCC-------------UCU---CUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 228596 0.68 0.633929
Target:  5'- cAGUCAgcgaGGCCGUCGcGuu-GGCGCGCCa -3'
miRNA:   3'- -UCGGUg---UCGGCGGC-CucuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 13531 0.68 0.605278
Target:  5'- cGGCCcgGGCCGCCgugcuGGAGGGcCGCcCCa -3'
miRNA:   3'- -UCGGugUCGGCGG-----CCUCUCuGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 110458 0.68 0.653034
Target:  5'- uGGCCuuugcGCuGCCGCUGGAcc-GCGUGCCc -3'
miRNA:   3'- -UCGG-----UGuCGGCGGCCUcucUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 196140 0.68 0.653034
Target:  5'- cGGCCGCuGCCuGCCGGcGGcccUGUGCCg -3'
miRNA:   3'- -UCGGUGuCGG-CGGCCuCUcu-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 113629 0.68 0.653034
Target:  5'- cGUCGCAGCgccgGCUGGAGAG-CGagagGCCg -3'
miRNA:   3'- uCGGUGUCGg---CGGCCUCUCuGCg---CGG- -5'
2026 3' -62.1 NC_001347.2 + 31164 0.68 0.643486
Target:  5'- cGCCcucagacuuggaACGGCUGUuugCGGAGAGACGCuaCCu -3'
miRNA:   3'- uCGG------------UGUCGGCG---GCCUCUCUGCGc-GG- -5'
2026 3' -62.1 NC_001347.2 + 70924 0.68 0.653034
Target:  5'- cGCC-UAGCCaUUGG-GAGACGCGCa -3'
miRNA:   3'- uCGGuGUCGGcGGCCuCUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 38414 0.68 0.605278
Target:  5'- uGCCGCucGCCGCUGGcGGcGACGuCGUCc -3'
miRNA:   3'- uCGGUGu-CGGCGGCC-UCuCUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 161344 0.67 0.662568
Target:  5'- gGGgUugGGCaggacucccuCGuuGGAGAGACGCGUg -3'
miRNA:   3'- -UCgGugUCG----------GCggCCUCUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 142365 0.67 0.661616
Target:  5'- cGCC-CAgcgauuaacggacGCCGCCGGGGGGGagGUGCa -3'
miRNA:   3'- uCGGuGU-------------CGGCGGCCUCUCUg-CGCGg -5'
2026 3' -62.1 NC_001347.2 + 93910 0.67 0.662568
Target:  5'- aAGCCACAGCCGCuuCGGGcaaacGGCGauCCg -3'
miRNA:   3'- -UCGGUGUCGGCG--GCCUcu---CUGCgcGG- -5'
2026 3' -62.1 NC_001347.2 + 90527 0.67 0.662568
Target:  5'- gAGaCCGagaaauCGGCgGCCGGAGAc-UGCGCCg -3'
miRNA:   3'- -UC-GGU------GUCGgCGGCCUCUcuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2664 0.67 0.662568
Target:  5'- uGGCCACGGUgGUuaUGGAGGccGGCG-GCCa -3'
miRNA:   3'- -UCGGUGUCGgCG--GCCUCU--CUGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.