miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 222404 0.72 0.384611
Target:  5'- -aCCAguCGGCCGU-GGAGAGGCGuCGCCg -3'
miRNA:   3'- ucGGU--GUCGGCGgCCUCUCUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 156803 0.72 0.392426
Target:  5'- cAGCgGCAGCggcgggccaggaCGUCGGAGGGuccGCGCGUCg -3'
miRNA:   3'- -UCGgUGUCG------------GCGGCCUCUC---UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 196962 0.72 0.400342
Target:  5'- uGUCGCGcGCCGCCGacgcccGAGAcGGCGCGCg -3'
miRNA:   3'- uCGGUGU-CGGCGGC------CUCU-CUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 177626 0.72 0.400342
Target:  5'- uGGCCGCgcucuuGGCCgaGCCGGGGAGGagaGCGUa -3'
miRNA:   3'- -UCGGUG------UCGG--CGGCCUCUCUg--CGCGg -5'
2026 3' -62.1 NC_001347.2 + 135442 0.72 0.400342
Target:  5'- -aCCGgAGCCGCCGaGAGGGAgcCGCCg -3'
miRNA:   3'- ucGGUgUCGGCGGC-CUCUCUgcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 199786 0.72 0.40836
Target:  5'- cGCCGguGCCGCCGGucu--CGCGCa -3'
miRNA:   3'- uCGGUguCGGCGGCCucucuGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 136195 0.72 0.40836
Target:  5'- uGCCGCGGacugCGCCGGGGGGcgGCGggcaCGCCg -3'
miRNA:   3'- uCGGUGUCg---GCGGCCUCUC--UGC----GCGG- -5'
2026 3' -62.1 NC_001347.2 + 14284 0.72 0.424693
Target:  5'- cGCUGCAguuauGCCGCCGGAGcucccCGCGCUg -3'
miRNA:   3'- uCGGUGU-----CGGCGGCCUCucu--GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 158012 0.72 0.428006
Target:  5'- cAGCUGCGGCgguaggacacgcgggCGCCGGAcagcAGGCGCGUCa -3'
miRNA:   3'- -UCGGUGUCG---------------GCGGCCUc---UCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 108306 0.71 0.433005
Target:  5'- cGCCGguGCUGCCGcacGAGACGCGaCUc -3'
miRNA:   3'- uCGGUguCGGCGGCcu-CUCUGCGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 157816 0.71 0.438879
Target:  5'- cAGCCGCGGUCGCCGcaguugcGGGGCcucaucgcagccuuGCGCCg -3'
miRNA:   3'- -UCGGUGUCGGCGGCcu-----CUCUG--------------CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2145 0.71 0.44141
Target:  5'- cGCaCGCGGUgGUCGGGGcGGACGCGgCa -3'
miRNA:   3'- uCG-GUGUCGgCGGCCUC-UCUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 190145 0.71 0.44141
Target:  5'- gGGCCGCAaccggguuCUGCCGGcauGGGGgGCGCCa -3'
miRNA:   3'- -UCGGUGUc-------GGCGGCCu--CUCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 100195 0.71 0.449907
Target:  5'- cGCCGCGGCCucgcccagguaGCCGGAGAcGGCG-GUUa -3'
miRNA:   3'- uCGGUGUCGG-----------CGGCCUCU-CUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 222822 0.71 0.461952
Target:  5'- cGCCGCAGCuguagcaguuaacguCGCCGGccuccaggaGGAGAUgGCGCUg -3'
miRNA:   3'- uCGGUGUCG---------------GCGGCC---------UCUCUG-CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 39493 0.71 0.467166
Target:  5'- cGGCCccGCGGCCGCgaccaaggggCGG-GGGGCGCGgCg -3'
miRNA:   3'- -UCGG--UGUCGGCG----------GCCuCUCUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 192258 0.71 0.467166
Target:  5'- cGGCCcgAGCgCGCCGGGGAGAagaaccucuuccCGgGCCc -3'
miRNA:   3'- -UCGGugUCG-GCGGCCUCUCU------------GCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 1189 0.71 0.467166
Target:  5'- aGGCCAUGGgCGCCGu-GuGGCGCGCg -3'
miRNA:   3'- -UCGGUGUCgGCGGCcuCuCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 159455 0.71 0.483874
Target:  5'- cGGCCGCGGCCGCUcGAuGAcgaugucGGCGCGgCg -3'
miRNA:   3'- -UCGGUGUCGGCGGcCU-CU-------CUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 39319 0.71 0.484761
Target:  5'- uGCUAUuguuGCCGCuacuCGGAGGGGCGC-CCg -3'
miRNA:   3'- uCGGUGu---CGGCG----GCCUCUCUGCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.