miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 185129 0.7 0.493677
Target:  5'- cGGCgcgaGCAGCCGCCGGGcGGcACGgGCa -3'
miRNA:   3'- -UCGg---UGUCGGCGGCCUcUC-UGCgCGg -5'
2026 3' -62.1 NC_001347.2 + 53732 0.7 0.502666
Target:  5'- gGGUCACAGCCgcguGCCGcGGGuG-CGCGCa -3'
miRNA:   3'- -UCGGUGUCGG----CGGC-CUCuCuGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 184499 0.7 0.511727
Target:  5'- cGGCC-CGGCCGCCGcgccguguGAGAGuuccaGgGCCg -3'
miRNA:   3'- -UCGGuGUCGGCGGC--------CUCUCug---CgCGG- -5'
2026 3' -62.1 NC_001347.2 + 125313 0.7 0.520854
Target:  5'- cGUCGCAGCCgcGCCGGccucGAGcauguACGCGCUu -3'
miRNA:   3'- uCGGUGUCGG--CGGCCu---CUC-----UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 76626 0.7 0.530044
Target:  5'- cGGCUGCGGCCGCgGcGGAGGCcgaaGCgGCCu -3'
miRNA:   3'- -UCGGUGUCGGCGgCcUCUCUG----CG-CGG- -5'
2026 3' -62.1 NC_001347.2 + 79037 0.7 0.539293
Target:  5'- gAGCUgauuuGCAGCCGC--GAGaAGGCGCGUCg -3'
miRNA:   3'- -UCGG-----UGUCGGCGgcCUC-UCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 1759 0.7 0.539293
Target:  5'- cGCUGCAGaCGCCGGGcAGGCGacugcaGCCg -3'
miRNA:   3'- uCGGUGUCgGCGGCCUcUCUGCg-----CGG- -5'
2026 3' -62.1 NC_001347.2 + 73723 0.69 0.557949
Target:  5'- cGGgCACcGCCGCCGGAG--GCGCGg- -3'
miRNA:   3'- -UCgGUGuCGGCGGCCUCucUGCGCgg -5'
2026 3' -62.1 NC_001347.2 + 156493 0.69 0.567346
Target:  5'- cAGUCACAGCgGCagCGGuccgucccuGuGGCGCGCCc -3'
miRNA:   3'- -UCGGUGUCGgCG--GCCu--------CuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 65511 0.69 0.575837
Target:  5'- cGCCggACuGCCGCCcGAGcugaagcAGACGCGCg -3'
miRNA:   3'- uCGG--UGuCGGCGGcCUC-------UCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 168196 0.69 0.586254
Target:  5'- cGGCCACGGCgCGacaauugaCGuAGGGcCGCGCCu -3'
miRNA:   3'- -UCGGUGUCG-GCg-------GCcUCUCuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 99140 0.69 0.594803
Target:  5'- aAGCCGCGGCgcgcguaCGCC-GAGAcccGACGCGgCg -3'
miRNA:   3'- -UCGGUGUCG-------GCGGcCUCU---CUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 13531 0.68 0.605278
Target:  5'- cGGCCcgGGCCGCCgugcuGGAGGGcCGCcCCa -3'
miRNA:   3'- -UCGGugUCGGCGG-----CCUCUCuGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 38414 0.68 0.605278
Target:  5'- uGCCGCucGCCGCUGGcGGcGACGuCGUCc -3'
miRNA:   3'- uCGGUGu-CGGCGGCC-UCuCUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 193894 0.68 0.613865
Target:  5'- gAGCCcguCAuGCCGCUGGGcgaaauuGAGG-GCGCCg -3'
miRNA:   3'- -UCGGu--GU-CGGCGGCCU-------CUCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 195834 0.68 0.614819
Target:  5'- uGUCugGGCCGCgCuucGAGGCGUGCCc -3'
miRNA:   3'- uCGGugUCGGCG-GccuCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 136286 0.68 0.614819
Target:  5'- cGCCGCGGCCcaugcCCGGcacGGGGcuCGCGCUc -3'
miRNA:   3'- uCGGUGUCGGc----GGCC---UCUCu-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2444 0.68 0.614819
Target:  5'- cAGUgGgAGCgGCCGcgcuGGGACGCGCUg -3'
miRNA:   3'- -UCGgUgUCGgCGGCcu--CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 164846 0.68 0.617684
Target:  5'- cGCCGCAGCUGUaggacggugguaccgCGGAcgaagaaGAGGC-CGCCg -3'
miRNA:   3'- uCGGUGUCGGCG---------------GCCU-------CUCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 178897 0.68 0.624372
Target:  5'- cGCCGCuGCCGCCGGuc-GugGUGa- -3'
miRNA:   3'- uCGGUGuCGGCGGCCucuCugCGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.