Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2026 | 3' | -62.1 | NC_001347.2 | + | 161344 | 0.67 | 0.662568 |
Target: 5'- gGGgUugGGCaggacucccuCGuuGGAGAGACGCGUg -3' miRNA: 3'- -UCgGugUCG----------GCggCCUCUCUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 86908 | 0.67 | 0.662568 |
Target: 5'- cGCCAU-GCuCGCCcaGGAGAcAgGCGCCg -3' miRNA: 3'- uCGGUGuCG-GCGG--CCUCUcUgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 198873 | 0.67 | 0.672081 |
Target: 5'- gAGCCGCugcagguuuuGCCGauagaGGuAGAG-CGCGCCg -3' miRNA: 3'- -UCGGUGu---------CGGCgg---CC-UCUCuGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 88356 | 0.67 | 0.678723 |
Target: 5'- cGCCGCuggcggcGCUGCCGcGAGAcGACGUggacggcacuacggGCCg -3' miRNA: 3'- uCGGUGu------CGGCGGC-CUCU-CUGCG--------------CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 188171 | 0.67 | 0.694782 |
Target: 5'- aAGCCcacgcugcccguucgGCGGCCGUCGGcuauuacgacgaAGAGGaaaaGCGUCg -3' miRNA: 3'- -UCGG---------------UGUCGGCGGCC------------UCUCUg---CGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 228729 | 0.67 | 0.699481 |
Target: 5'- cGCCGCGGCggauuucCGCgCGG-GGGACGggguaGCCg -3' miRNA: 3'- uCGGUGUCG-------GCG-GCCuCUCUGCg----CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 174937 | 0.67 | 0.70042 |
Target: 5'- cGGcCCACGGCaaCUGGuuaaaAGAGACGUGCUc -3' miRNA: 3'- -UC-GGUGUCGgcGGCC-----UCUCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100865 | 0.67 | 0.70042 |
Target: 5'- cGUCACAGCCGaggCGGcGcGGCgcaGCGCCg -3' miRNA: 3'- uCGGUGUCGGCg--GCCuCuCUG---CGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 157210 | 0.67 | 0.70042 |
Target: 5'- cGGCCGCGGUgcgcugcaGCCGGAG-GAaGCGgCg -3' miRNA: 3'- -UCGGUGUCGg-------CGGCCUCuCUgCGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 918 | 0.67 | 0.70042 |
Target: 5'- uGGUCGCGGCCG-CGGGGccGGAgG-GCCu -3' miRNA: 3'- -UCGGUGUCGGCgGCCUC--UCUgCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 136010 | 0.67 | 0.70042 |
Target: 5'- -cCCcCGGCCGagguCCGGAGcGGGcCGCGCCc -3' miRNA: 3'- ucGGuGUCGGC----GGCCUC-UCU-GCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 38001 | 0.67 | 0.708843 |
Target: 5'- gGGCaGCAGCCGCCGcGcggccucGGcGGCggGCGCCg -3' miRNA: 3'- -UCGgUGUCGGCGGC-C-------UCuCUG--CGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 208826 | 0.67 | 0.709776 |
Target: 5'- cGCCGC-GCCGCCGuccucGAaGCGCCa -3' miRNA: 3'- uCGGUGuCGGCGGCcucu-CUgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 197543 | 0.66 | 0.719074 |
Target: 5'- gGGaCCGCAGCgugGCCGGcGuGGCG-GCCg -3' miRNA: 3'- -UC-GGUGUCGg--CGGCCuCuCUGCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 38518 | 0.66 | 0.719074 |
Target: 5'- cAGCCGCAGCacagaCGCUGGuucAGGugccGACGCacgGCCg -3' miRNA: 3'- -UCGGUGUCG-----GCGGCC---UCU----CUGCG---CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 87147 | 0.66 | 0.719074 |
Target: 5'- cGCCguaGGCCGgcuaCGGGGAaACGCGCg -3' miRNA: 3'- uCGGug-UCGGCg---GCCUCUcUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 68241 | 0.66 | 0.719074 |
Target: 5'- cGCCGCAaccaccgccuCCGCUGGAG-GAUuCGCCg -3' miRNA: 3'- uCGGUGUc---------GGCGGCCUCuCUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 67352 | 0.66 | 0.728308 |
Target: 5'- -cCCGCAGCCGCCGccGucGC-CGCCg -3' miRNA: 3'- ucGGUGUCGGCGGCcuCucUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 128668 | 0.66 | 0.728308 |
Target: 5'- cGCC-CGuGCCGCCGGc--GAC-CGCCg -3' miRNA: 3'- uCGGuGU-CGGCGGCCucuCUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 174309 | 0.66 | 0.731981 |
Target: 5'- gAGCaucaACGacgagaugaaggaacGCaCGCUGGAG-GACGCGCUg -3' miRNA: 3'- -UCGg---UGU---------------CG-GCGGCCUCuCUGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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