miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 172049 0.66 0.755544
Target:  5'- cGCCAgcGCgCGCUGGGaAGcgcuGCGCGCCg -3'
miRNA:   3'- uCGGUguCG-GCGGCCUcUC----UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 58867 0.66 0.755544
Target:  5'- cGGCaGCGGCaCGCCGGAGuGACcucucccaCGCa -3'
miRNA:   3'- -UCGgUGUCG-GCGGCCUCuCUGc-------GCGg -5'
2026 3' -62.1 NC_001347.2 + 143000 0.66 0.755544
Target:  5'- cGGCgGCGGCgGUggUGGAGgaGGuuGCGCCg -3'
miRNA:   3'- -UCGgUGUCGgCG--GCCUC--UCugCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 192626 0.66 0.755544
Target:  5'- cGCCgGCAGCUGCagcaCGuGGAGACGCuGCg -3'
miRNA:   3'- uCGG-UGUCGGCG----GCcUCUCUGCG-CGg -5'
2026 3' -62.1 NC_001347.2 + 136048 0.66 0.750158
Target:  5'- cGGcCCACGGCC-CCGGAugGugcuccagggcggugGGACGgGCCc -3'
miRNA:   3'- -UC-GGUGUCGGcGGCCU--C---------------UCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 165664 0.66 0.74655
Target:  5'- cGCU-CAGCCGCgCGuccAGAcGCGCGCCc -3'
miRNA:   3'- uCGGuGUCGGCG-GCc--UCUcUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 174706 0.66 0.74655
Target:  5'- -uCCGCGGCUucguGCaGGAGGGccugcgcaacuACGCGCCg -3'
miRNA:   3'- ucGGUGUCGG----CGgCCUCUC-----------UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 36391 0.66 0.74655
Target:  5'- cGGCCuuAGCgGCuCGGGcuGGCGUGCUg -3'
miRNA:   3'- -UCGGugUCGgCG-GCCUcuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 225586 0.66 0.74655
Target:  5'- uAGCCGCccGUgGCCgGGAGAaGACGgaggaGCCg -3'
miRNA:   3'- -UCGGUGu-CGgCGG-CCUCU-CUGCg----CGG- -5'
2026 3' -62.1 NC_001347.2 + 143670 0.66 0.737469
Target:  5'- cGCCGgaGGCCgGCCuGGAGGucuGCGCGCa -3'
miRNA:   3'- uCGGUg-UCGG-CGG-CCUCUc--UGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 5561 0.66 0.737469
Target:  5'- cGGCa--AGuuGCgCGGuGGGGGCGUGCCc -3'
miRNA:   3'- -UCGgugUCggCG-GCC-UCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 193649 0.66 0.737469
Target:  5'- gGGCCGagcuguGCCGCCGcuc--GCGCGCCu -3'
miRNA:   3'- -UCGGUgu----CGGCGGCcucucUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 136922 0.66 0.737469
Target:  5'- cGUCAuCAGagaugauuuCCGCCGGAGAuGACGCacGCa -3'
miRNA:   3'- uCGGU-GUC---------GGCGGCCUCU-CUGCG--CGg -5'
2026 3' -62.1 NC_001347.2 + 41406 0.66 0.736556
Target:  5'- aGGCCACGGCCGCCGuGuacaguuAGA-ACGU-CCa -3'
miRNA:   3'- -UCGGUGUCGGCGGC-C-------UCUcUGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 80861 0.66 0.736556
Target:  5'- cGCCACuaccaccGCCGCCGcuagaauggcgguGAGuGACGaCGCa -3'
miRNA:   3'- uCGGUGu------CGGCGGC-------------CUCuCUGC-GCGg -5'
2026 3' -62.1 NC_001347.2 + 174309 0.66 0.731981
Target:  5'- gAGCaucaACGacgagaugaaggaacGCaCGCUGGAG-GACGCGCUg -3'
miRNA:   3'- -UCGg---UGU---------------CG-GCGGCCUCuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 128668 0.66 0.728308
Target:  5'- cGCC-CGuGCCGCCGGc--GAC-CGCCg -3'
miRNA:   3'- uCGGuGU-CGGCGGCCucuCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 67352 0.66 0.728308
Target:  5'- -cCCGCAGCCGCCGccGucGC-CGCCg -3'
miRNA:   3'- ucGGUGUCGGCGGCcuCucUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 68241 0.66 0.719074
Target:  5'- cGCCGCAaccaccgccuCCGCUGGAG-GAUuCGCCg -3'
miRNA:   3'- uCGGUGUc---------GGCGGCCUCuCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 38518 0.66 0.719074
Target:  5'- cAGCCGCAGCacagaCGCUGGuucAGGugccGACGCacgGCCg -3'
miRNA:   3'- -UCGGUGUCG-----GCGGCC---UCU----CUGCG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.