miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 38518 0.66 0.719074
Target:  5'- cAGCCGCAGCacagaCGCUGGuucAGGugccGACGCacgGCCg -3'
miRNA:   3'- -UCGGUGUCG-----GCGGCC---UCU----CUGCG---CGG- -5'
2026 3' -62.1 NC_001347.2 + 87147 0.66 0.719074
Target:  5'- cGCCguaGGCCGgcuaCGGGGAaACGCGCg -3'
miRNA:   3'- uCGGug-UCGGCg---GCCUCUcUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 208826 0.67 0.709776
Target:  5'- cGCCGC-GCCGCCGuccucGAaGCGCCa -3'
miRNA:   3'- uCGGUGuCGGCGGCcucu-CUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 38001 0.67 0.708843
Target:  5'- gGGCaGCAGCCGCCGcGcggccucGGcGGCggGCGCCg -3'
miRNA:   3'- -UCGgUGUCGGCGGC-C-------UCuCUG--CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 100865 0.67 0.70042
Target:  5'- cGUCACAGCCGaggCGGcGcGGCgcaGCGCCg -3'
miRNA:   3'- uCGGUGUCGGCg--GCCuCuCUG---CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 918 0.67 0.70042
Target:  5'- uGGUCGCGGCCG-CGGGGccGGAgG-GCCu -3'
miRNA:   3'- -UCGGUGUCGGCgGCCUC--UCUgCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 174937 0.67 0.70042
Target:  5'- cGGcCCACGGCaaCUGGuuaaaAGAGACGUGCUc -3'
miRNA:   3'- -UC-GGUGUCGgcGGCC-----UCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 136010 0.67 0.70042
Target:  5'- -cCCcCGGCCGagguCCGGAGcGGGcCGCGCCc -3'
miRNA:   3'- ucGGuGUCGGC----GGCCUC-UCU-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 157210 0.67 0.70042
Target:  5'- cGGCCGCGGUgcgcugcaGCCGGAG-GAaGCGgCg -3'
miRNA:   3'- -UCGGUGUCGg-------CGGCCUCuCUgCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 228729 0.67 0.699481
Target:  5'- cGCCGCGGCggauuucCGCgCGG-GGGACGggguaGCCg -3'
miRNA:   3'- uCGGUGUCG-------GCG-GCCuCUCUGCg----CGG- -5'
2026 3' -62.1 NC_001347.2 + 188171 0.67 0.694782
Target:  5'- aAGCCcacgcugcccguucgGCGGCCGUCGGcuauuacgacgaAGAGGaaaaGCGUCg -3'
miRNA:   3'- -UCGG---------------UGUCGGCGGCC------------UCUCUg---CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 88356 0.67 0.678723
Target:  5'- cGCCGCuggcggcGCUGCCGcGAGAcGACGUggacggcacuacggGCCg -3'
miRNA:   3'- uCGGUGu------CGGCGGC-CUCU-CUGCG--------------CGG- -5'
2026 3' -62.1 NC_001347.2 + 198873 0.67 0.672081
Target:  5'- gAGCCGCugcagguuuuGCCGauagaGGuAGAG-CGCGCCg -3'
miRNA:   3'- -UCGGUGu---------CGGCgg---CC-UCUCuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 161344 0.67 0.662568
Target:  5'- gGGgUugGGCaggacucccuCGuuGGAGAGACGCGUg -3'
miRNA:   3'- -UCgGugUCG----------GCggCCUCUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 93910 0.67 0.662568
Target:  5'- aAGCCACAGCCGCuuCGGGcaaacGGCGauCCg -3'
miRNA:   3'- -UCGGUGUCGGCG--GCCUcu---CUGCgcGG- -5'
2026 3' -62.1 NC_001347.2 + 90527 0.67 0.662568
Target:  5'- gAGaCCGagaaauCGGCgGCCGGAGAc-UGCGCCg -3'
miRNA:   3'- -UC-GGU------GUCGgCGGCCUCUcuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2664 0.67 0.662568
Target:  5'- uGGCCACGGUgGUuaUGGAGGccGGCG-GCCa -3'
miRNA:   3'- -UCGGUGUCGgCG--GCCUCU--CUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 86908 0.67 0.662568
Target:  5'- cGCCAU-GCuCGCCcaGGAGAcAgGCGCCg -3'
miRNA:   3'- uCGGUGuCG-GCGG--CCUCUcUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 105992 0.67 0.662568
Target:  5'- cGGCCGCAGCacguguCGCCcGAcgacGAGAuCGCGCg -3'
miRNA:   3'- -UCGGUGUCG------GCGGcCU----CUCU-GCGCGg -5'
2026 3' -62.1 NC_001347.2 + 142365 0.67 0.661616
Target:  5'- cGCC-CAgcgauuaacggacGCCGCCGGGGGGGagGUGCa -3'
miRNA:   3'- uCGGuGU-------------CGGCGGCCUCUCUg-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.