Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2026 | 3' | -62.1 | NC_001347.2 | + | 70924 | 0.68 | 0.653034 |
Target: 5'- cGCC-UAGCCaUUGG-GAGACGCGCa -3' miRNA: 3'- uCGGuGUCGGcGGCCuCUCUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 110458 | 0.68 | 0.653034 |
Target: 5'- uGGCCuuugcGCuGCCGCUGGAcc-GCGUGCCc -3' miRNA: 3'- -UCGG-----UGuCGGCGGCCUcucUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 113629 | 0.68 | 0.653034 |
Target: 5'- cGUCGCAGCgccgGCUGGAGAG-CGagagGCCg -3' miRNA: 3'- uCGGUGUCGg---CGGCCUCUCuGCg---CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 196140 | 0.68 | 0.653034 |
Target: 5'- cGGCCGCuGCCuGCCGGcGGcccUGUGCCg -3' miRNA: 3'- -UCGGUGuCGG-CGGCCuCUcu-GCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 31164 | 0.68 | 0.643486 |
Target: 5'- cGCCcucagacuuggaACGGCUGUuugCGGAGAGACGCuaCCu -3' miRNA: 3'- uCGG------------UGUCGGCG---GCCUCUCUGCGc-GG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 25890 | 0.68 | 0.633929 |
Target: 5'- cGCUACGagacGCCGCUGGAac-GCGCGCUu -3' miRNA: 3'- uCGGUGU----CGGCGGCCUcucUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 228596 | 0.68 | 0.633929 |
Target: 5'- cAGUCAgcgaGGCCGUCGcGuu-GGCGCGCCa -3' miRNA: 3'- -UCGGUg---UCGGCGGC-CucuCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 114505 | 0.68 | 0.632974 |
Target: 5'- cGCCACAccgGCCuGCCGGucguuuuccccgaAGAccuGGCGCGCa -3' miRNA: 3'- uCGGUGU---CGG-CGGCC-------------UCU---CUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 2241 | 0.68 | 0.628195 |
Target: 5'- uGCCGCGcgccaugcuggugguGCUGCUGGAcGAGcuGgGCGCCg -3' miRNA: 3'- uCGGUGU---------------CGGCGGCCU-CUC--UgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 80502 | 0.68 | 0.624372 |
Target: 5'- cGGcCCACAcGCCG-UGGAaGGGCGCGCa -3' miRNA: 3'- -UC-GGUGU-CGGCgGCCUcUCUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 83932 | 0.68 | 0.624372 |
Target: 5'- uGGCCACAGCCuCCGGcGaAGAaGuCGCUg -3' miRNA: 3'- -UCGGUGUCGGcGGCCuC-UCUgC-GCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 178897 | 0.68 | 0.624372 |
Target: 5'- cGCCGCuGCCGCCGGuc-GugGUGa- -3' miRNA: 3'- uCGGUGuCGGCGGCCucuCugCGCgg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 81670 | 0.68 | 0.624372 |
Target: 5'- uGCCACucauccucgGGCaCGCCGagcGAGAG-CGCGCa -3' miRNA: 3'- uCGGUG---------UCG-GCGGC---CUCUCuGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 36696 | 0.68 | 0.624372 |
Target: 5'- uGGCCugAGCaCGCCGaGGcccAGugGCGgCa -3' miRNA: 3'- -UCGGugUCG-GCGGCcUC---UCugCGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 1705 | 0.68 | 0.624372 |
Target: 5'- aGGCgACGG-CGCuCGGAcGGGAgcUGCGCCg -3' miRNA: 3'- -UCGgUGUCgGCG-GCCU-CUCU--GCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 143719 | 0.68 | 0.624372 |
Target: 5'- cGCCuauGCGGCaucuCGCCGGu--GGCGCGUCa -3' miRNA: 3'- uCGG---UGUCG----GCGGCCucuCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 164846 | 0.68 | 0.617684 |
Target: 5'- cGCCGCAGCUGUaggacggugguaccgCGGAcgaagaaGAGGC-CGCCg -3' miRNA: 3'- uCGGUGUCGGCG---------------GCCU-------CUCUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 136286 | 0.68 | 0.614819 |
Target: 5'- cGCCGCGGCCcaugcCCGGcacGGGGcuCGCGCUc -3' miRNA: 3'- uCGGUGUCGGc----GGCC---UCUCu-GCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 195834 | 0.68 | 0.614819 |
Target: 5'- uGUCugGGCCGCgCuucGAGGCGUGCCc -3' miRNA: 3'- uCGGugUCGGCG-GccuCUCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 2444 | 0.68 | 0.614819 |
Target: 5'- cAGUgGgAGCgGCCGcgcuGGGACGCGCUg -3' miRNA: 3'- -UCGgUgUCGgCGGCcu--CUCUGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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