miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 918 0.67 0.70042
Target:  5'- uGGUCGCGGCCG-CGGGGccGGAgG-GCCu -3'
miRNA:   3'- -UCGGUGUCGGCgGCCUC--UCUgCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 1189 0.71 0.467166
Target:  5'- aGGCCAUGGgCGCCGu-GuGGCGCGCg -3'
miRNA:   3'- -UCGGUGUCgGCGGCcuCuCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 1705 0.68 0.624372
Target:  5'- aGGCgACGG-CGCuCGGAcGGGAgcUGCGCCg -3'
miRNA:   3'- -UCGgUGUCgGCG-GCCU-CUCU--GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 1759 0.7 0.539293
Target:  5'- cGCUGCAGaCGCCGGGcAGGCGacugcaGCCg -3'
miRNA:   3'- uCGGUGUCgGCGGCCUcUCUGCg-----CGG- -5'
2026 3' -62.1 NC_001347.2 + 2008 0.84 0.070267
Target:  5'- gAGCgGCacggagacggaGGCCGCCGGcGGGGACGCGCCg -3'
miRNA:   3'- -UCGgUG-----------UCGGCGGCC-UCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2093 0.73 0.369295
Target:  5'- cAGCCguACGgcGCCGCCGGcGGGGGCGCGa- -3'
miRNA:   3'- -UCGG--UGU--CGGCGGCC-UCUCUGCGCgg -5'
2026 3' -62.1 NC_001347.2 + 2145 0.71 0.44141
Target:  5'- cGCaCGCGGUgGUCGGGGcGGACGCGgCa -3'
miRNA:   3'- uCG-GUGUCGgCGGCCUC-UCUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 2241 0.68 0.628195
Target:  5'- uGCCGCGcgccaugcuggugguGCUGCUGGAcGAGcuGgGCGCCg -3'
miRNA:   3'- uCGGUGU---------------CGGCGGCCU-CUC--UgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2444 0.68 0.614819
Target:  5'- cAGUgGgAGCgGCCGcgcuGGGACGCGCUg -3'
miRNA:   3'- -UCGgUgUCGgCGGCcu--CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 2664 0.67 0.662568
Target:  5'- uGGCCACGGUgGUuaUGGAGGccGGCG-GCCa -3'
miRNA:   3'- -UCGGUGUCGgCG--GCCUCU--CUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 5561 0.66 0.737469
Target:  5'- cGGCa--AGuuGCgCGGuGGGGGCGUGCCc -3'
miRNA:   3'- -UCGgugUCggCG-GCC-UCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 6861 0.66 0.755544
Target:  5'- cGGCgUGCAGCCGCCG-AGcccgucGACGuUGCCg -3'
miRNA:   3'- -UCG-GUGUCGGCGGCcUCu-----CUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 13531 0.68 0.605278
Target:  5'- cGGCCcgGGCCGCCgugcuGGAGGGcCGCcCCa -3'
miRNA:   3'- -UCGGugUCGGCGG-----CCUCUCuGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 14284 0.72 0.424693
Target:  5'- cGCUGCAguuauGCCGCCGGAGcucccCGCGCUg -3'
miRNA:   3'- uCGGUGU-----CGGCGGCCUCucu--GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 16067 0.73 0.376901
Target:  5'- cGGCCcgGCAGCaccauGCCGGAGcuACGCGaCCa -3'
miRNA:   3'- -UCGG--UGUCGg----CGGCCUCucUGCGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 16832 0.66 0.773238
Target:  5'- cGGCgCGCGGCCagGCUGGAacgcaacgGAGGCuGCGUa -3'
miRNA:   3'- -UCG-GUGUCGG--CGGCCU--------CUCUG-CGCGg -5'
2026 3' -62.1 NC_001347.2 + 25890 0.68 0.633929
Target:  5'- cGCUACGagacGCCGCUGGAac-GCGCGCUu -3'
miRNA:   3'- uCGGUGU----CGGCGGCCUcucUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 31164 0.68 0.643486
Target:  5'- cGCCcucagacuuggaACGGCUGUuugCGGAGAGACGCuaCCu -3'
miRNA:   3'- uCGG------------UGUCGGCG---GCCUCUCUGCGc-GG- -5'
2026 3' -62.1 NC_001347.2 + 35679 0.66 0.755544
Target:  5'- -aUCACuaaaGCCGGGGaAGACGCGCUc -3'
miRNA:   3'- ucGGUGucggCGGCCUC-UCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 36391 0.66 0.74655
Target:  5'- cGGCCuuAGCgGCuCGGGcuGGCGUGCUg -3'
miRNA:   3'- -UCGGugUCGgCG-GCCUcuCUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.