miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 36696 0.68 0.624372
Target:  5'- uGGCCugAGCaCGCCGaGGcccAGugGCGgCa -3'
miRNA:   3'- -UCGGugUCG-GCGGCcUC---UCugCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 36795 0.66 0.764442
Target:  5'- cGGUCGCGGaCCGCggaguCGGGGAGAaGCuCCu -3'
miRNA:   3'- -UCGGUGUC-GGCG-----GCCUCUCUgCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 38001 0.67 0.708843
Target:  5'- gGGCaGCAGCCGCCGcGcggccucGGcGGCggGCGCCg -3'
miRNA:   3'- -UCGgUGUCGGCGGC-C-------UCuCUG--CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 38414 0.68 0.605278
Target:  5'- uGCCGCucGCCGCUGGcGGcGACGuCGUCc -3'
miRNA:   3'- uCGGUGu-CGGCGGCC-UCuCUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 38518 0.66 0.719074
Target:  5'- cAGCCGCAGCacagaCGCUGGuucAGGugccGACGCacgGCCg -3'
miRNA:   3'- -UCGGUGUCG-----GCGGCC---UCU----CUGCG---CGG- -5'
2026 3' -62.1 NC_001347.2 + 38729 0.66 0.770611
Target:  5'- cGGCgCGCAGCaacgucugucggagCGCCGGcuGAGGCagcaGCGUCg -3'
miRNA:   3'- -UCG-GUGUCG--------------GCGGCCu-CUCUG----CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 39319 0.71 0.484761
Target:  5'- uGCUAUuguuGCCGCuacuCGGAGGGGCGC-CCg -3'
miRNA:   3'- uCGGUGu---CGGCG----GCCUCUCUGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 39493 0.71 0.467166
Target:  5'- cGGCCccGCGGCCGCgaccaaggggCGG-GGGGCGCGgCg -3'
miRNA:   3'- -UCGG--UGUCGGCG----------GCCuCUCUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 39547 0.66 0.773238
Target:  5'- gGGCCAUGGgCGCCGGAcaccuccGACGU-CCa -3'
miRNA:   3'- -UCGGUGUCgGCGGCCUcu-----CUGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 39793 0.74 0.325905
Target:  5'- gAGCgCACAGCCGCCucccGGGCGCGCa -3'
miRNA:   3'- -UCG-GUGUCGGCGGccucUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 41406 0.66 0.736556
Target:  5'- aGGCCACGGCCGCCGuGuacaguuAGA-ACGU-CCa -3'
miRNA:   3'- -UCGGUGUCGGCGGC-C-------UCUcUGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 53732 0.7 0.502666
Target:  5'- gGGUCACAGCCgcguGCCGcGGGuG-CGCGCa -3'
miRNA:   3'- -UCGGUGUCGG----CGGC-CUCuCuGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 56600 0.66 0.764442
Target:  5'- uGCCACGGUacgUGUCGGGGuu-UGUGCCc -3'
miRNA:   3'- uCGGUGUCG---GCGGCCUCucuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 58867 0.66 0.755544
Target:  5'- cGGCaGCGGCaCGCCGGAGuGACcucucccaCGCa -3'
miRNA:   3'- -UCGgUGUCG-GCGGCCUCuCUGc-------GCGg -5'
2026 3' -62.1 NC_001347.2 + 63115 0.74 0.332867
Target:  5'- cGCCGCGGCCGCCGcuguggccGGAGugccCGuCGCCg -3'
miRNA:   3'- uCGGUGUCGGCGGCc-------UCUCu---GC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 65511 0.69 0.575837
Target:  5'- cGCCggACuGCCGCCcGAGcugaagcAGACGCGCg -3'
miRNA:   3'- uCGG--UGuCGGCGGcCUC-------UCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 65721 0.66 0.764442
Target:  5'- cGGUgGCGGCgG-UGGAG-GGCGCGCg -3'
miRNA:   3'- -UCGgUGUCGgCgGCCUCuCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 67352 0.66 0.728308
Target:  5'- -cCCGCAGCCGCCGccGucGC-CGCCg -3'
miRNA:   3'- ucGGUGUCGGCGGCcuCucUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 68241 0.66 0.719074
Target:  5'- cGCCGCAaccaccgccuCCGCUGGAG-GAUuCGCCg -3'
miRNA:   3'- uCGGUGUc---------GGCGGCCUCuCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 68747 0.66 0.755544
Target:  5'- gAGCgAguGCCGCCGcAGccggcAGA-GCGCCg -3'
miRNA:   3'- -UCGgUguCGGCGGCcUC-----UCUgCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.