miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 70924 0.68 0.653034
Target:  5'- cGCC-UAGCCaUUGG-GAGACGCGCa -3'
miRNA:   3'- uCGGuGUCGGcGGCCuCUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 73723 0.69 0.557949
Target:  5'- cGGgCACcGCCGCCGGAG--GCGCGg- -3'
miRNA:   3'- -UCgGUGuCGGCGGCCUCucUGCGCgg -5'
2026 3' -62.1 NC_001347.2 + 76626 0.7 0.530044
Target:  5'- cGGCUGCGGCCGCgGcGGAGGCcgaaGCgGCCu -3'
miRNA:   3'- -UCGGUGUCGGCGgCcUCUCUG----CG-CGG- -5'
2026 3' -62.1 NC_001347.2 + 79037 0.7 0.539293
Target:  5'- gAGCUgauuuGCAGCCGC--GAGaAGGCGCGUCg -3'
miRNA:   3'- -UCGG-----UGUCGGCGgcCUC-UCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 80502 0.68 0.624372
Target:  5'- cGGcCCACAcGCCG-UGGAaGGGCGCGCa -3'
miRNA:   3'- -UC-GGUGU-CGGCgGCCUcUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 80861 0.66 0.736556
Target:  5'- cGCCACuaccaccGCCGCCGcuagaauggcgguGAGuGACGaCGCa -3'
miRNA:   3'- uCGGUGu------CGGCGGC-------------CUCuCUGC-GCGg -5'
2026 3' -62.1 NC_001347.2 + 81670 0.68 0.624372
Target:  5'- uGCCACucauccucgGGCaCGCCGagcGAGAG-CGCGCa -3'
miRNA:   3'- uCGGUG---------UCG-GCGGC---CUCUCuGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 83932 0.68 0.624372
Target:  5'- uGGCCACAGCCuCCGGcGaAGAaGuCGCUg -3'
miRNA:   3'- -UCGGUGUCGGcGGCCuC-UCUgC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 85650 0.75 0.26813
Target:  5'- aGGCCACGGCCGCCGcGu----CGUGCCu -3'
miRNA:   3'- -UCGGUGUCGGCGGC-CucucuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 86908 0.67 0.662568
Target:  5'- cGCCAU-GCuCGCCcaGGAGAcAgGCGCCg -3'
miRNA:   3'- uCGGUGuCG-GCGG--CCUCUcUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 87147 0.66 0.719074
Target:  5'- cGCCguaGGCCGgcuaCGGGGAaACGCGCg -3'
miRNA:   3'- uCGGug-UCGGCg---GCCUCUcUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 88241 0.77 0.213945
Target:  5'- gGGUCGCuGCCGCCGGugaAGAGAgCGCGgCg -3'
miRNA:   3'- -UCGGUGuCGGCGGCC---UCUCU-GCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 88356 0.67 0.678723
Target:  5'- cGCCGCuggcggcGCUGCCGcGAGAcGACGUggacggcacuacggGCCg -3'
miRNA:   3'- uCGGUGu------CGGCGGC-CUCU-CUGCG--------------CGG- -5'
2026 3' -62.1 NC_001347.2 + 90527 0.67 0.662568
Target:  5'- gAGaCCGagaaauCGGCgGCCGGAGAc-UGCGCCg -3'
miRNA:   3'- -UC-GGU------GUCGgCGGCCUCUcuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 92258 0.8 0.143393
Target:  5'- aGGCCGUGGCCGCCGccauGAGGCGCGUCa -3'
miRNA:   3'- -UCGGUGUCGGCGGCcu--CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 93910 0.67 0.662568
Target:  5'- aAGCCACAGCCGCuuCGGGcaaacGGCGauCCg -3'
miRNA:   3'- -UCGGUGUCGGCG--GCCUcu---CUGCgcGG- -5'
2026 3' -62.1 NC_001347.2 + 99140 0.69 0.594803
Target:  5'- aAGCCGCGGCgcgcguaCGCC-GAGAcccGACGCGgCg -3'
miRNA:   3'- -UCGGUGUCG-------GCGGcCUCU---CUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 100195 0.71 0.449907
Target:  5'- cGCCGCGGCCucgcccagguaGCCGGAGAcGGCG-GUUa -3'
miRNA:   3'- uCGGUGUCGG-----------CGGCCUCU-CUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 100362 0.66 0.773238
Target:  5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3'
miRNA:   3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5'
2026 3' -62.1 NC_001347.2 + 100865 0.67 0.70042
Target:  5'- cGUCACAGCCGaggCGGcGcGGCgcaGCGCCg -3'
miRNA:   3'- uCGGUGUCGGCg--GCCuCuCUG---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.