miRNA display CGI


Results 61 - 80 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 100948 0.66 0.763557
Target:  5'- cGCCGCcGCCGCgaUGGAGAacuggucGGCGCucgagcuccuGCCu -3'
miRNA:   3'- uCGGUGuCGGCG--GCCUCU-------CUGCG----------CGG- -5'
2026 3' -62.1 NC_001347.2 + 105992 0.67 0.662568
Target:  5'- cGGCCGCAGCacguguCGCCcGAcgacGAGAuCGCGCg -3'
miRNA:   3'- -UCGGUGUCG------GCGGcCU----CUCU-GCGCGg -5'
2026 3' -62.1 NC_001347.2 + 108154 0.79 0.157791
Target:  5'- aGGCgGCGGCCGCa-GAG-GGCGCGCCg -3'
miRNA:   3'- -UCGgUGUCGGCGgcCUCuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 108306 0.71 0.433005
Target:  5'- cGCCGguGCUGCCGcacGAGACGCGaCUc -3'
miRNA:   3'- uCGGUguCGGCGGCcu-CUCUGCGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 110458 0.68 0.653034
Target:  5'- uGGCCuuugcGCuGCCGCUGGAcc-GCGUGCCc -3'
miRNA:   3'- -UCGG-----UGuCGGCGGCCUcucUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 112612 0.75 0.274118
Target:  5'- -uCCAUA-CCGcCCGGAGAGuCGCGCCg -3'
miRNA:   3'- ucGGUGUcGGC-GGCCUCUCuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 113183 0.76 0.234399
Target:  5'- cGCCcCAGCCGCCGGcGuGGCG-GCCu -3'
miRNA:   3'- uCGGuGUCGGCGGCCuCuCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 113629 0.68 0.653034
Target:  5'- cGUCGCAGCgccgGCUGGAGAG-CGagagGCCg -3'
miRNA:   3'- uCGGUGUCGg---CGGCCUCUCuGCg---CGG- -5'
2026 3' -62.1 NC_001347.2 + 114505 0.68 0.632974
Target:  5'- cGCCACAccgGCCuGCCGGucguuuuccccgaAGAccuGGCGCGCa -3'
miRNA:   3'- uCGGUGU---CGG-CGGCC-------------UCU---CUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 116741 0.66 0.764442
Target:  5'- cGGUCACGGCCaacagagccagGCCGGAaaGAGcugcgacaGCGUGaCCg -3'
miRNA:   3'- -UCGGUGUCGG-----------CGGCCU--CUC--------UGCGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 125313 0.7 0.520854
Target:  5'- cGUCGCAGCCgcGCCGGccucGAGcauguACGCGCUu -3'
miRNA:   3'- uCGGUGUCGG--CGGCCu---CUC-----UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 128668 0.66 0.728308
Target:  5'- cGCC-CGuGCCGCCGGc--GAC-CGCCg -3'
miRNA:   3'- uCGGuGU-CGGCGGCCucuCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 135189 0.76 0.250797
Target:  5'- cGCCACAGCCuGgUGGGGuccGAgGCGCCg -3'
miRNA:   3'- uCGGUGUCGG-CgGCCUCu--CUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 135442 0.72 0.400342
Target:  5'- -aCCGgAGCCGCCGaGAGGGAgcCGCCg -3'
miRNA:   3'- ucGGUgUCGGCGGC-CUCUCUgcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 135825 0.66 0.773238
Target:  5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3'
miRNA:   3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 135964 0.66 0.755544
Target:  5'- cGGCCG-GGCCGUCGGAuGGGgGgGUCg -3'
miRNA:   3'- -UCGGUgUCGGCGGCCUcUCUgCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 136010 0.67 0.70042
Target:  5'- -cCCcCGGCCGagguCCGGAGcGGGcCGCGCCc -3'
miRNA:   3'- ucGGuGUCGGC----GGCCUC-UCU-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 136048 0.66 0.750158
Target:  5'- cGGcCCACGGCC-CCGGAugGugcuccagggcggugGGACGgGCCc -3'
miRNA:   3'- -UC-GGUGUCGGcGGCCU--C---------------UCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 136195 0.72 0.40836
Target:  5'- uGCCGCGGacugCGCCGGGGGGcgGCGggcaCGCCg -3'
miRNA:   3'- uCGGUGUCg---GCGGCCUCUC--UGC----GCGG- -5'
2026 3' -62.1 NC_001347.2 + 136286 0.68 0.614819
Target:  5'- cGCCGCGGCCcaugcCCGGcacGGGGcuCGCGCUc -3'
miRNA:   3'- uCGGUGUCGGc----GGCC---UCUCu-GCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.