miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 228729 0.67 0.699481
Target:  5'- cGCCGCGGCggauuucCGCgCGG-GGGACGggguaGCCg -3'
miRNA:   3'- uCGGUGUCG-------GCG-GCCuCUCUGCg----CGG- -5'
2026 3' -62.1 NC_001347.2 + 228596 0.68 0.633929
Target:  5'- cAGUCAgcgaGGCCGUCGcGuu-GGCGCGCCa -3'
miRNA:   3'- -UCGGUg---UCGGCGGC-CucuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 225586 0.66 0.74655
Target:  5'- uAGCCGCccGUgGCCgGGAGAaGACGgaggaGCCg -3'
miRNA:   3'- -UCGGUGu-CGgCGG-CCUCU-CUGCg----CGG- -5'
2026 3' -62.1 NC_001347.2 + 222822 0.71 0.461952
Target:  5'- cGCCGCAGCuguagcaguuaacguCGCCGGccuccaggaGGAGAUgGCGCUg -3'
miRNA:   3'- uCGGUGUCG---------------GCGGCC---------UCUCUG-CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 222404 0.72 0.384611
Target:  5'- -aCCAguCGGCCGU-GGAGAGGCGuCGCCg -3'
miRNA:   3'- ucGGU--GUCGGCGgCCUCUCUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 210009 0.74 0.332867
Target:  5'- gGGUCGCGGuCCGCCGGuguuGGGAC-CGCUu -3'
miRNA:   3'- -UCGGUGUC-GGCGGCCu---CUCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 208826 0.67 0.709776
Target:  5'- cGCCGC-GCCGCCGuccucGAaGCGCCa -3'
miRNA:   3'- uCGGUGuCGGCGGCcucu-CUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 207021 0.66 0.764442
Target:  5'- cAGCCgcugacACAGUCGCUGGGG-GAUccguaGgGCCa -3'
miRNA:   3'- -UCGG------UGUCGGCGGCCUCuCUG-----CgCGG- -5'
2026 3' -62.1 NC_001347.2 + 199786 0.72 0.40836
Target:  5'- cGCCGguGCCGCCGGucu--CGCGCa -3'
miRNA:   3'- uCGGUguCGGCGGCCucucuGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 199687 0.74 0.299146
Target:  5'- cGGCCuugGguGUCGCCGGcgagccccGAGGCGCGCCc -3'
miRNA:   3'- -UCGG---UguCGGCGGCCu-------CUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 199019 0.76 0.25647
Target:  5'- cGUC-CAGCCGCCGcAGAGACGUGgCg -3'
miRNA:   3'- uCGGuGUCGGCGGCcUCUCUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 198873 0.67 0.672081
Target:  5'- gAGCCGCugcagguuuuGCCGauagaGGuAGAG-CGCGCCg -3'
miRNA:   3'- -UCGGUGu---------CGGCgg---CC-UCUCuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 197635 0.76 0.25647
Target:  5'- uGCCGCAGCUGCUGGAGc-GCG-GCCu -3'
miRNA:   3'- uCGGUGUCGGCGGCCUCucUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 197543 0.66 0.719074
Target:  5'- gGGaCCGCAGCgugGCCGGcGuGGCG-GCCg -3'
miRNA:   3'- -UC-GGUGUCGg--CGGCCuCuCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 197115 0.66 0.773238
Target:  5'- cGCCGCAaggccCCGCUGGAacucGGGCcCGCCg -3'
miRNA:   3'- uCGGUGUc----GGCGGCCUc---UCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 196962 0.72 0.400342
Target:  5'- uGUCGCGcGCCGCCGacgcccGAGAcGGCGCGCg -3'
miRNA:   3'- uCGGUGU-CGGCGGC------CUCU-CUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 196140 0.68 0.653034
Target:  5'- cGGCCGCuGCCuGCCGGcGGcccUGUGCCg -3'
miRNA:   3'- -UCGGUGuCGG-CGGCCuCUcu-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 195834 0.68 0.614819
Target:  5'- uGUCugGGCCGCgCuucGAGGCGUGCCc -3'
miRNA:   3'- uCGGugUCGGCG-GccuCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 193894 0.68 0.613865
Target:  5'- gAGCCcguCAuGCCGCUGGGcgaaauuGAGG-GCGCCg -3'
miRNA:   3'- -UCGGu--GU-CGGCGGCCU-------CUCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 193649 0.66 0.737469
Target:  5'- gGGCCGagcuguGCCGCCGcuc--GCGCGCCu -3'
miRNA:   3'- -UCGGUgu----CGGCGGCcucucUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.