miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 192626 0.66 0.755544
Target:  5'- cGCCgGCAGCUGCagcaCGuGGAGACGCuGCg -3'
miRNA:   3'- uCGG-UGUCGGCG----GCcUCUCUGCG-CGg -5'
2026 3' -62.1 NC_001347.2 + 192258 0.71 0.467166
Target:  5'- cGGCCcgAGCgCGCCGGGGAGAagaaccucuuccCGgGCCc -3'
miRNA:   3'- -UCGGugUCG-GCGGCCUCUCU------------GCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 190145 0.71 0.44141
Target:  5'- gGGCCGCAaccggguuCUGCCGGcauGGGGgGCGCCa -3'
miRNA:   3'- -UCGGUGUc-------GGCGGCCu--CUCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 188171 0.67 0.694782
Target:  5'- aAGCCcacgcugcccguucgGCGGCCGUCGGcuauuacgacgaAGAGGaaaaGCGUCg -3'
miRNA:   3'- -UCGG---------------UGUCGGCGGCC------------UCUCUg---CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 185129 0.7 0.493677
Target:  5'- cGGCgcgaGCAGCCGCCGGGcGGcACGgGCa -3'
miRNA:   3'- -UCGg---UGUCGGCGGCCUcUC-UGCgCGg -5'
2026 3' -62.1 NC_001347.2 + 184499 0.7 0.511727
Target:  5'- cGGCC-CGGCCGCCGcgccguguGAGAGuuccaGgGCCg -3'
miRNA:   3'- -UCGGuGUCGGCGGC--------CUCUCug---CgCGG- -5'
2026 3' -62.1 NC_001347.2 + 183474 0.73 0.376901
Target:  5'- cGCCuCGGCC-UCGG-GAGACGCGCg -3'
miRNA:   3'- uCGGuGUCGGcGGCCuCUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 178897 0.68 0.624372
Target:  5'- cGCCGCuGCCGCCGGuc-GugGUGa- -3'
miRNA:   3'- uCGGUGuCGGCGGCCucuCugCGCgg -5'
2026 3' -62.1 NC_001347.2 + 177626 0.72 0.400342
Target:  5'- uGGCCGCgcucuuGGCCgaGCCGGGGAGGagaGCGUa -3'
miRNA:   3'- -UCGGUG------UCGG--CGGCCUCUCUg--CGCGg -5'
2026 3' -62.1 NC_001347.2 + 174937 0.67 0.70042
Target:  5'- cGGcCCACGGCaaCUGGuuaaaAGAGACGUGCUc -3'
miRNA:   3'- -UC-GGUGUCGgcGGCC-----UCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 174706 0.66 0.74655
Target:  5'- -uCCGCGGCUucguGCaGGAGGGccugcgcaacuACGCGCCg -3'
miRNA:   3'- ucGGUGUCGG----CGgCCUCUC-----------UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 174309 0.66 0.731981
Target:  5'- gAGCaucaACGacgagaugaaggaacGCaCGCUGGAG-GACGCGCUg -3'
miRNA:   3'- -UCGg---UGU---------------CG-GCGGCCUCuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 172049 0.66 0.755544
Target:  5'- cGCCAgcGCgCGCUGGGaAGcgcuGCGCGCCg -3'
miRNA:   3'- uCGGUguCG-GCGGCCUcUC----UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 168310 0.66 0.773238
Target:  5'- uGCCGCGG-CGCuCGGuc-GACGCGUUg -3'
miRNA:   3'- uCGGUGUCgGCG-GCCucuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 168196 0.69 0.586254
Target:  5'- cGGCCACGGCgCGacaauugaCGuAGGGcCGCGCCu -3'
miRNA:   3'- -UCGGUGUCG-GCg-------GCcUCUCuGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 166621 0.76 0.239762
Target:  5'- cGUCAC-GCCGUCcuccGAGAGGCGCGCCc -3'
miRNA:   3'- uCGGUGuCGGCGGc---CUCUCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 166069 0.66 0.773238
Target:  5'- gAGUCGCGGCgGuuGGGGcgccgauucccAGG-GCGCCu -3'
miRNA:   3'- -UCGGUGUCGgCggCCUC-----------UCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 165664 0.66 0.74655
Target:  5'- cGCU-CAGCCGCgCGuccAGAcGCGCGCCc -3'
miRNA:   3'- uCGGuGUCGGCG-GCc--UCUcUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 164846 0.68 0.617684
Target:  5'- cGCCGCAGCUGUaggacggugguaccgCGGAcgaagaaGAGGC-CGCCg -3'
miRNA:   3'- uCGGUGUCGGCG---------------GCCU-------CUCUGcGCGG- -5'
2026 3' -62.1 NC_001347.2 + 163629 0.73 0.354402
Target:  5'- gAGCCGCGGCUGCCcGGGu--CGCGCa -3'
miRNA:   3'- -UCGGUGUCGGCGGcCUCucuGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.