miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 161344 0.67 0.662568
Target:  5'- gGGgUugGGCaggacucccuCGuuGGAGAGACGCGUg -3'
miRNA:   3'- -UCgGugUCG----------GCggCCUCUCUGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 159455 0.71 0.483874
Target:  5'- cGGCCGCGGCCGCUcGAuGAcgaugucGGCGCGgCg -3'
miRNA:   3'- -UCGGUGUCGGCGGcCU-CU-------CUGCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 158012 0.72 0.428006
Target:  5'- cAGCUGCGGCgguaggacacgcgggCGCCGGAcagcAGGCGCGUCa -3'
miRNA:   3'- -UCGGUGUCG---------------GCGGCCUc---UCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 157816 0.71 0.438879
Target:  5'- cAGCCGCGGUCGCCGcaguugcGGGGCcucaucgcagccuuGCGCCg -3'
miRNA:   3'- -UCGGUGUCGGCGGCcu-----CUCUG--------------CGCGG- -5'
2026 3' -62.1 NC_001347.2 + 157210 0.67 0.70042
Target:  5'- cGGCCGCGGUgcgcugcaGCCGGAG-GAaGCGgCg -3'
miRNA:   3'- -UCGGUGUCGg-------CGGCCUCuCUgCGCgG- -5'
2026 3' -62.1 NC_001347.2 + 156803 0.72 0.392426
Target:  5'- cAGCgGCAGCggcgggccaggaCGUCGGAGGGuccGCGCGUCg -3'
miRNA:   3'- -UCGgUGUCG------------GCGGCCUCUC---UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 156493 0.69 0.567346
Target:  5'- cAGUCACAGCgGCagCGGuccgucccuGuGGCGCGCCc -3'
miRNA:   3'- -UCGGUGUCGgCG--GCCu--------CuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 152440 0.73 0.339937
Target:  5'- gGGCCGCAGCCGuuGGuGGAaacuACGUGCa -3'
miRNA:   3'- -UCGGUGUCGGCggCC-UCUc---UGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 147864 0.66 0.773238
Target:  5'- cGGCCugGG-CGCCGcGGGAaaggccguuGGCGUaGCCa -3'
miRNA:   3'- -UCGGugUCgGCGGC-CUCU---------CUGCG-CGG- -5'
2026 3' -62.1 NC_001347.2 + 145562 0.66 0.761783
Target:  5'- cGCCGCGGCCGUCucgggugucuucagGGAGccGGAC-CGaCCu -3'
miRNA:   3'- uCGGUGUCGGCGG--------------CCUC--UCUGcGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 143719 0.68 0.624372
Target:  5'- cGCCuauGCGGCaucuCGCCGGu--GGCGCGUCa -3'
miRNA:   3'- uCGG---UGUCG----GCGGCCucuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 143670 0.66 0.737469
Target:  5'- cGCCGgaGGCCgGCCuGGAGGucuGCGCGCa -3'
miRNA:   3'- uCGGUg-UCGG-CGG-CCUCUc--UGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 143000 0.66 0.755544
Target:  5'- cGGCgGCGGCgGUggUGGAGgaGGuuGCGCCg -3'
miRNA:   3'- -UCGgUGUCGgCG--GCCUC--UCugCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 142365 0.67 0.661616
Target:  5'- cGCC-CAgcgauuaacggacGCCGCCGGGGGGGagGUGCa -3'
miRNA:   3'- uCGGuGU-------------CGGCGGCCUCUCUg-CGCGg -5'
2026 3' -62.1 NC_001347.2 + 136922 0.66 0.737469
Target:  5'- cGUCAuCAGagaugauuuCCGCCGGAGAuGACGCacGCa -3'
miRNA:   3'- uCGGU-GUC---------GGCGGCCUCU-CUGCG--CGg -5'
2026 3' -62.1 NC_001347.2 + 136286 0.68 0.614819
Target:  5'- cGCCGCGGCCcaugcCCGGcacGGGGcuCGCGCUc -3'
miRNA:   3'- uCGGUGUCGGc----GGCC---UCUCu-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 136195 0.72 0.40836
Target:  5'- uGCCGCGGacugCGCCGGGGGGcgGCGggcaCGCCg -3'
miRNA:   3'- uCGGUGUCg---GCGGCCUCUC--UGC----GCGG- -5'
2026 3' -62.1 NC_001347.2 + 136048 0.66 0.750158
Target:  5'- cGGcCCACGGCC-CCGGAugGugcuccagggcggugGGACGgGCCc -3'
miRNA:   3'- -UC-GGUGUCGGcGGCCU--C---------------UCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 136010 0.67 0.70042
Target:  5'- -cCCcCGGCCGagguCCGGAGcGGGcCGCGCCc -3'
miRNA:   3'- ucGGuGUCGGC----GGCCUC-UCU-GCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 135964 0.66 0.755544
Target:  5'- cGGCCG-GGCCGUCGGAuGGGgGgGUCg -3'
miRNA:   3'- -UCGGUgUCGGCGGCCUcUCUgCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.