Results 61 - 80 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2026 | 3' | -62.1 | NC_001347.2 | + | 135825 | 0.66 | 0.773238 |
Target: 5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3' miRNA: 3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 135442 | 0.72 | 0.400342 |
Target: 5'- -aCCGgAGCCGCCGaGAGGGAgcCGCCg -3' miRNA: 3'- ucGGUgUCGGCGGC-CUCUCUgcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 135189 | 0.76 | 0.250797 |
Target: 5'- cGCCACAGCCuGgUGGGGuccGAgGCGCCg -3' miRNA: 3'- uCGGUGUCGG-CgGCCUCu--CUgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 128668 | 0.66 | 0.728308 |
Target: 5'- cGCC-CGuGCCGCCGGc--GAC-CGCCg -3' miRNA: 3'- uCGGuGU-CGGCGGCCucuCUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 125313 | 0.7 | 0.520854 |
Target: 5'- cGUCGCAGCCgcGCCGGccucGAGcauguACGCGCUu -3' miRNA: 3'- uCGGUGUCGG--CGGCCu---CUC-----UGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 116741 | 0.66 | 0.764442 |
Target: 5'- cGGUCACGGCCaacagagccagGCCGGAaaGAGcugcgacaGCGUGaCCg -3' miRNA: 3'- -UCGGUGUCGG-----------CGGCCU--CUC--------UGCGC-GG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 114505 | 0.68 | 0.632974 |
Target: 5'- cGCCACAccgGCCuGCCGGucguuuuccccgaAGAccuGGCGCGCa -3' miRNA: 3'- uCGGUGU---CGG-CGGCC-------------UCU---CUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 113629 | 0.68 | 0.653034 |
Target: 5'- cGUCGCAGCgccgGCUGGAGAG-CGagagGCCg -3' miRNA: 3'- uCGGUGUCGg---CGGCCUCUCuGCg---CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 113183 | 0.76 | 0.234399 |
Target: 5'- cGCCcCAGCCGCCGGcGuGGCG-GCCu -3' miRNA: 3'- uCGGuGUCGGCGGCCuCuCUGCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 112612 | 0.75 | 0.274118 |
Target: 5'- -uCCAUA-CCGcCCGGAGAGuCGCGCCg -3' miRNA: 3'- ucGGUGUcGGC-GGCCUCUCuGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 110458 | 0.68 | 0.653034 |
Target: 5'- uGGCCuuugcGCuGCCGCUGGAcc-GCGUGCCc -3' miRNA: 3'- -UCGG-----UGuCGGCGGCCUcucUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 108306 | 0.71 | 0.433005 |
Target: 5'- cGCCGguGCUGCCGcacGAGACGCGaCUc -3' miRNA: 3'- uCGGUguCGGCGGCcu-CUCUGCGC-GG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 108154 | 0.79 | 0.157791 |
Target: 5'- aGGCgGCGGCCGCa-GAG-GGCGCGCCg -3' miRNA: 3'- -UCGgUGUCGGCGgcCUCuCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 105992 | 0.67 | 0.662568 |
Target: 5'- cGGCCGCAGCacguguCGCCcGAcgacGAGAuCGCGCg -3' miRNA: 3'- -UCGGUGUCG------GCGGcCU----CUCU-GCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100948 | 0.66 | 0.763557 |
Target: 5'- cGCCGCcGCCGCgaUGGAGAacuggucGGCGCucgagcuccuGCCu -3' miRNA: 3'- uCGGUGuCGGCG--GCCUCU-------CUGCG----------CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100865 | 0.67 | 0.70042 |
Target: 5'- cGUCACAGCCGaggCGGcGcGGCgcaGCGCCg -3' miRNA: 3'- uCGGUGUCGGCg--GCCuCuCUG---CGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100362 | 0.66 | 0.773238 |
Target: 5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3' miRNA: 3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100195 | 0.71 | 0.449907 |
Target: 5'- cGCCGCGGCCucgcccagguaGCCGGAGAcGGCG-GUUa -3' miRNA: 3'- uCGGUGUCGG-----------CGGCCUCU-CUGCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 99140 | 0.69 | 0.594803 |
Target: 5'- aAGCCGCGGCgcgcguaCGCC-GAGAcccGACGCGgCg -3' miRNA: 3'- -UCGGUGUCG-------GCGGcCUCU---CUGCGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 93910 | 0.67 | 0.662568 |
Target: 5'- aAGCCACAGCCGCuuCGGGcaaacGGCGauCCg -3' miRNA: 3'- -UCGGUGUCGGCG--GCCUcu---CUGCgcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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