miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 3' -62.1 NC_001347.2 + 135825 0.66 0.773238
Target:  5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3'
miRNA:   3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 39547 0.66 0.773238
Target:  5'- gGGCCAUGGgCGCCGGAcaccuccGACGU-CCa -3'
miRNA:   3'- -UCGGUGUCgGCGGCCUcu-----CUGCGcGG- -5'
2026 3' -62.1 NC_001347.2 + 147864 0.66 0.773238
Target:  5'- cGGCCugGG-CGCCGcGGGAaaggccguuGGCGUaGCCa -3'
miRNA:   3'- -UCGGugUCgGCGGC-CUCU---------CUGCG-CGG- -5'
2026 3' -62.1 NC_001347.2 + 166069 0.66 0.773238
Target:  5'- gAGUCGCGGCgGuuGGGGcgccgauucccAGG-GCGCCu -3'
miRNA:   3'- -UCGGUGUCGgCggCCUC-----------UCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 100362 0.66 0.773238
Target:  5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3'
miRNA:   3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5'
2026 3' -62.1 NC_001347.2 + 145562 0.66 0.761783
Target:  5'- cGCCGCGGCCGUCucgggugucuucagGGAGccGGAC-CGaCCu -3'
miRNA:   3'- uCGGUGUCGGCGG--------------CCUC--UCUGcGC-GG- -5'
2026 3' -62.1 NC_001347.2 + 100948 0.66 0.763557
Target:  5'- cGCCGCcGCCGCgaUGGAGAacuggucGGCGCucgagcuccuGCCu -3'
miRNA:   3'- uCGGUGuCGGCG--GCCUCU-------CUGCG----------CGG- -5'
2026 3' -62.1 NC_001347.2 + 143670 0.66 0.737469
Target:  5'- cGCCGgaGGCCgGCCuGGAGGucuGCGCGCa -3'
miRNA:   3'- uCGGUg-UCGG-CGG-CCUCUc--UGCGCGg -5'
2026 3' -62.1 NC_001347.2 + 174706 0.66 0.74655
Target:  5'- -uCCGCGGCUucguGCaGGAGGGccugcgcaacuACGCGCCg -3'
miRNA:   3'- ucGGUGUCGG----CGgCCUCUC-----------UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 36391 0.66 0.74655
Target:  5'- cGGCCuuAGCgGCuCGGGcuGGCGUGCUg -3'
miRNA:   3'- -UCGGugUCGgCG-GCCUcuCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 225586 0.66 0.74655
Target:  5'- uAGCCGCccGUgGCCgGGAGAaGACGgaggaGCCg -3'
miRNA:   3'- -UCGGUGu-CGgCGG-CCUCU-CUGCg----CGG- -5'
2026 3' -62.1 NC_001347.2 + 6861 0.66 0.755544
Target:  5'- cGGCgUGCAGCCGCCG-AGcccgucGACGuUGCCg -3'
miRNA:   3'- -UCG-GUGUCGGCGGCcUCu-----CUGC-GCGG- -5'
2026 3' -62.1 NC_001347.2 + 136048 0.66 0.750158
Target:  5'- cGGcCCACGGCC-CCGGAugGugcuccagggcggugGGACGgGCCc -3'
miRNA:   3'- -UC-GGUGUCGGcGGCCU--C---------------UCUGCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 35679 0.66 0.755544
Target:  5'- -aUCACuaaaGCCGGGGaAGACGCGCUc -3'
miRNA:   3'- ucGGUGucggCGGCCUC-UCUGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 68747 0.66 0.755544
Target:  5'- gAGCgAguGCCGCCGcAGccggcAGA-GCGCCg -3'
miRNA:   3'- -UCGgUguCGGCGGCcUC-----UCUgCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 135964 0.66 0.755544
Target:  5'- cGGCCG-GGCCGUCGGAuGGGgGgGUCg -3'
miRNA:   3'- -UCGGUgUCGGCGGCCUcUCUgCgCGG- -5'
2026 3' -62.1 NC_001347.2 + 172049 0.66 0.755544
Target:  5'- cGCCAgcGCgCGCUGGGaAGcgcuGCGCGCCg -3'
miRNA:   3'- uCGGUguCG-GCGGCCUcUC----UGCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 58867 0.66 0.755544
Target:  5'- cGGCaGCGGCaCGCCGGAGuGACcucucccaCGCa -3'
miRNA:   3'- -UCGgUGUCG-GCGGCCUCuCUGc-------GCGg -5'
2026 3' -62.1 NC_001347.2 + 143000 0.66 0.755544
Target:  5'- cGGCgGCGGCgGUggUGGAGgaGGuuGCGCCg -3'
miRNA:   3'- -UCGgUGUCGgCG--GCCUC--UCugCGCGG- -5'
2026 3' -62.1 NC_001347.2 + 192626 0.66 0.755544
Target:  5'- cGCCgGCAGCUGCagcaCGuGGAGACGCuGCg -3'
miRNA:   3'- uCGG-UGUCGGCG----GCcUCUCUGCG-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.