Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2026 | 3' | -62.1 | NC_001347.2 | + | 108154 | 0.79 | 0.157791 |
Target: 5'- aGGCgGCGGCCGCa-GAG-GGCGCGCCg -3' miRNA: 3'- -UCGgUGUCGGCGgcCUCuCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 56600 | 0.66 | 0.764442 |
Target: 5'- uGCCACGGUacgUGUCGGGGuu-UGUGCCc -3' miRNA: 3'- uCGGUGUCG---GCGGCCUCucuGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 36795 | 0.66 | 0.764442 |
Target: 5'- cGGUCGCGGaCCGCggaguCGGGGAGAaGCuCCu -3' miRNA: 3'- -UCGGUGUC-GGCG-----GCCUCUCUgCGcGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 145562 | 0.66 | 0.761783 |
Target: 5'- cGCCGCGGCCGUCucgggugucuucagGGAGccGGAC-CGaCCu -3' miRNA: 3'- uCGGUGUCGGCGG--------------CCUC--UCUGcGC-GG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100948 | 0.66 | 0.763557 |
Target: 5'- cGCCGCcGCCGCgaUGGAGAacuggucGGCGCucgagcuccuGCCu -3' miRNA: 3'- uCGGUGuCGGCG--GCCUCU-------CUGCG----------CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 192626 | 0.66 | 0.755544 |
Target: 5'- cGCCgGCAGCUGCagcaCGuGGAGACGCuGCg -3' miRNA: 3'- uCGG-UGUCGGCG----GCcUCUCUGCG-CGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 143000 | 0.66 | 0.755544 |
Target: 5'- cGGCgGCGGCgGUggUGGAGgaGGuuGCGCCg -3' miRNA: 3'- -UCGgUGUCGgCG--GCCUC--UCugCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 58867 | 0.66 | 0.755544 |
Target: 5'- cGGCaGCGGCaCGCCGGAGuGACcucucccaCGCa -3' miRNA: 3'- -UCGgUGUCG-GCGGCCUCuCUGc-------GCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 172049 | 0.66 | 0.755544 |
Target: 5'- cGCCAgcGCgCGCUGGGaAGcgcuGCGCGCCg -3' miRNA: 3'- uCGGUguCG-GCGGCCUcUC----UGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 65721 | 0.66 | 0.764442 |
Target: 5'- cGGUgGCGGCgG-UGGAG-GGCGCGCg -3' miRNA: 3'- -UCGgUGUCGgCgGCCUCuCUGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 116741 | 0.66 | 0.764442 |
Target: 5'- cGGUCACGGCCaacagagccagGCCGGAaaGAGcugcgacaGCGUGaCCg -3' miRNA: 3'- -UCGGUGUCGG-----------CGGCCU--CUC--------UGCGC-GG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 207021 | 0.66 | 0.764442 |
Target: 5'- cAGCCgcugacACAGUCGCUGGGG-GAUccguaGgGCCa -3' miRNA: 3'- -UCGG------UGUCGGCGGCCUCuCUG-----CgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100362 | 0.66 | 0.773238 |
Target: 5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3' miRNA: 3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 166069 | 0.66 | 0.773238 |
Target: 5'- gAGUCGCGGCgGuuGGGGcgccgauucccAGG-GCGCCu -3' miRNA: 3'- -UCGGUGUCGgCggCCUC-----------UCUgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 147864 | 0.66 | 0.773238 |
Target: 5'- cGGCCugGG-CGCCGcGGGAaaggccguuGGCGUaGCCa -3' miRNA: 3'- -UCGGugUCgGCGGC-CUCU---------CUGCG-CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 39547 | 0.66 | 0.773238 |
Target: 5'- gGGCCAUGGgCGCCGGAcaccuccGACGU-CCa -3' miRNA: 3'- -UCGGUGUCgGCGGCCUcu-----CUGCGcGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 135825 | 0.66 | 0.773238 |
Target: 5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3' miRNA: 3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 16832 | 0.66 | 0.773238 |
Target: 5'- cGGCgCGCGGCCagGCUGGAacgcaacgGAGGCuGCGUa -3' miRNA: 3'- -UCG-GUGUCGG--CGGCCU--------CUCUG-CGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 197115 | 0.66 | 0.773238 |
Target: 5'- cGCCGCAaggccCCGCUGGAacucGGGCcCGCCg -3' miRNA: 3'- uCGGUGUc----GGCGGCCUc---UCUGcGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 38729 | 0.66 | 0.770611 |
Target: 5'- cGGCgCGCAGCaacgucugucggagCGCCGGcuGAGGCagcaGCGUCg -3' miRNA: 3'- -UCG-GUGUCG--------------GCGGCCu-CUCUG----CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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