Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2026 | 3' | -62.1 | NC_001347.2 | + | 135825 | 0.66 | 0.773238 |
Target: 5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3' miRNA: 3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 39547 | 0.66 | 0.773238 |
Target: 5'- gGGCCAUGGgCGCCGGAcaccuccGACGU-CCa -3' miRNA: 3'- -UCGGUGUCgGCGGCCUcu-----CUGCGcGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 147864 | 0.66 | 0.773238 |
Target: 5'- cGGCCugGG-CGCCGcGGGAaaggccguuGGCGUaGCCa -3' miRNA: 3'- -UCGGugUCgGCGGC-CUCU---------CUGCG-CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 166069 | 0.66 | 0.773238 |
Target: 5'- gAGUCGCGGCgGuuGGGGcgccgauucccAGG-GCGCCu -3' miRNA: 3'- -UCGGUGUCGgCggCCUC-----------UCUgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100362 | 0.66 | 0.773238 |
Target: 5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3' miRNA: 3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 145562 | 0.66 | 0.761783 |
Target: 5'- cGCCGCGGCCGUCucgggugucuucagGGAGccGGAC-CGaCCu -3' miRNA: 3'- uCGGUGUCGGCGG--------------CCUC--UCUGcGC-GG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 100948 | 0.66 | 0.763557 |
Target: 5'- cGCCGCcGCCGCgaUGGAGAacuggucGGCGCucgagcuccuGCCu -3' miRNA: 3'- uCGGUGuCGGCG--GCCUCU-------CUGCG----------CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 143670 | 0.66 | 0.737469 |
Target: 5'- cGCCGgaGGCCgGCCuGGAGGucuGCGCGCa -3' miRNA: 3'- uCGGUg-UCGG-CGG-CCUCUc--UGCGCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 174706 | 0.66 | 0.74655 |
Target: 5'- -uCCGCGGCUucguGCaGGAGGGccugcgcaacuACGCGCCg -3' miRNA: 3'- ucGGUGUCGG----CGgCCUCUC-----------UGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 36391 | 0.66 | 0.74655 |
Target: 5'- cGGCCuuAGCgGCuCGGGcuGGCGUGCUg -3' miRNA: 3'- -UCGGugUCGgCG-GCCUcuCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 225586 | 0.66 | 0.74655 |
Target: 5'- uAGCCGCccGUgGCCgGGAGAaGACGgaggaGCCg -3' miRNA: 3'- -UCGGUGu-CGgCGG-CCUCU-CUGCg----CGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 6861 | 0.66 | 0.755544 |
Target: 5'- cGGCgUGCAGCCGCCG-AGcccgucGACGuUGCCg -3' miRNA: 3'- -UCG-GUGUCGGCGGCcUCu-----CUGC-GCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 136048 | 0.66 | 0.750158 |
Target: 5'- cGGcCCACGGCC-CCGGAugGugcuccagggcggugGGACGgGCCc -3' miRNA: 3'- -UC-GGUGUCGGcGGCCU--C---------------UCUGCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 35679 | 0.66 | 0.755544 |
Target: 5'- -aUCACuaaaGCCGGGGaAGACGCGCUc -3' miRNA: 3'- ucGGUGucggCGGCCUC-UCUGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 68747 | 0.66 | 0.755544 |
Target: 5'- gAGCgAguGCCGCCGcAGccggcAGA-GCGCCg -3' miRNA: 3'- -UCGgUguCGGCGGCcUC-----UCUgCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 135964 | 0.66 | 0.755544 |
Target: 5'- cGGCCG-GGCCGUCGGAuGGGgGgGUCg -3' miRNA: 3'- -UCGGUgUCGGCGGCCUcUCUgCgCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 172049 | 0.66 | 0.755544 |
Target: 5'- cGCCAgcGCgCGCUGGGaAGcgcuGCGCGCCg -3' miRNA: 3'- uCGGUguCG-GCGGCCUcUC----UGCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 58867 | 0.66 | 0.755544 |
Target: 5'- cGGCaGCGGCaCGCCGGAGuGACcucucccaCGCa -3' miRNA: 3'- -UCGgUGUCG-GCGGCCUCuCUGc-------GCGg -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 143000 | 0.66 | 0.755544 |
Target: 5'- cGGCgGCGGCgGUggUGGAGgaGGuuGCGCCg -3' miRNA: 3'- -UCGgUGUCGgCG--GCCUC--UCugCGCGG- -5' |
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2026 | 3' | -62.1 | NC_001347.2 | + | 192626 | 0.66 | 0.755544 |
Target: 5'- cGCCgGCAGCUGCagcaCGuGGAGACGCuGCg -3' miRNA: 3'- uCGG-UGUCGGCG----GCcUCUCUGCG-CGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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