miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2026 5' -60.8 NC_001347.2 + 164832 0.66 0.721195
Target:  5'- -cGGCaGGGCCCCUucgccGCAGCUGuAGGa -3'
miRNA:   3'- uuUCGcUCCGGGGGuc---CGUCGAC-UCU- -5'
2026 5' -60.8 NC_001347.2 + 135848 0.66 0.721195
Target:  5'- -cAGCGAGGgaUCCCGGGCcggAGCccgGGGAg -3'
miRNA:   3'- uuUCGCUCCg-GGGGUCCG---UCGa--CUCU- -5'
2026 5' -60.8 NC_001347.2 + 142911 0.67 0.692239
Target:  5'- --cGCGucGGCgCCCGGGCcGcCUGAGGa -3'
miRNA:   3'- uuuCGCu-CCGgGGGUCCGuC-GACUCU- -5'
2026 5' -60.8 NC_001347.2 + 200197 0.67 0.672687
Target:  5'- cGGAGCGuggugugcgacGGGCCCCCGGGCucgcccaCUGAc- -3'
miRNA:   3'- -UUUCGC-----------UCCGGGGGUCCGuc-----GACUcu -5'
2026 5' -60.8 NC_001347.2 + 165808 0.67 0.661878
Target:  5'- cAAAGCGAGcgaugucGCCCUgGuGGCAGCUGGc- -3'
miRNA:   3'- -UUUCGCUC-------CGGGGgU-CCGUCGACUcu -5'
2026 5' -60.8 NC_001347.2 + 47599 0.68 0.623404
Target:  5'- --cGUGAGGCaucaCgUAcGGCAGCUGAGGa -3'
miRNA:   3'- uuuCGCUCCGg---GgGU-CCGUCGACUCU- -5'
2026 5' -60.8 NC_001347.2 + 82651 0.68 0.613537
Target:  5'- uAGGCaccGAGGCCUCUagaAGGCcguaccAGCUGAGAu -3'
miRNA:   3'- uUUCG---CUCCGGGGG---UCCG------UCGACUCU- -5'
2026 5' -60.8 NC_001347.2 + 100192 0.69 0.564527
Target:  5'- -cGGCGccgcGGCCucgCCCAGGUAGCcgGAGAc -3'
miRNA:   3'- uuUCGCu---CCGG---GGGUCCGUCGa-CUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.