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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2026 | 5' | -60.8 | NC_001347.2 | + | 47599 | 0.68 | 0.623404 |
Target: 5'- --cGUGAGGCaucaCgUAcGGCAGCUGAGGa -3' miRNA: 3'- uuuCGCUCCGg---GgGU-CCGUCGACUCU- -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 82651 | 0.68 | 0.613537 |
Target: 5'- uAGGCaccGAGGCCUCUagaAGGCcguaccAGCUGAGAu -3' miRNA: 3'- uUUCG---CUCCGGGGG---UCCG------UCGACUCU- -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 100192 | 0.69 | 0.564527 |
Target: 5'- -cGGCGccgcGGCCucgCCCAGGUAGCcgGAGAc -3' miRNA: 3'- uuUCGCu---CCGG---GGGUCCGUCGa-CUCU- -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 135848 | 0.66 | 0.721195 |
Target: 5'- -cAGCGAGGgaUCCCGGGCcggAGCccgGGGAg -3' miRNA: 3'- uuUCGCUCCg-GGGGUCCG---UCGa--CUCU- -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 142911 | 0.67 | 0.692239 |
Target: 5'- --cGCGucGGCgCCCGGGCcGcCUGAGGa -3' miRNA: 3'- uuuCGCu-CCGgGGGUCCGuC-GACUCU- -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 164832 | 0.66 | 0.721195 |
Target: 5'- -cGGCaGGGCCCCUucgccGCAGCUGuAGGa -3' miRNA: 3'- uuUCGcUCCGGGGGuc---CGUCGAC-UCU- -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 165808 | 0.67 | 0.661878 |
Target: 5'- cAAAGCGAGcgaugucGCCCUgGuGGCAGCUGGc- -3' miRNA: 3'- -UUUCGCUC-------CGGGGgU-CCGUCGACUcu -5' |
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2026 | 5' | -60.8 | NC_001347.2 | + | 200197 | 0.67 | 0.672687 |
Target: 5'- cGGAGCGuggugugcgacGGGCCCCCGGGCucgcccaCUGAc- -3' miRNA: 3'- -UUUCGC-----------UCCGGGGGUCCGuc-----GACUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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