miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2027 3' -52.5 NC_001347.2 + 41211 0.66 0.991812
Target:  5'- uGACGCcgacuGCUGGUGCAUgu--GGgGACg -3'
miRNA:   3'- -CUGCGu----CGACUACGUAaaggUCgCUG- -5'
2027 3' -52.5 NC_001347.2 + 99206 0.66 0.989203
Target:  5'- aACGCGGUUGGUguugaaaGCGUUgaCGGCGAUg -3'
miRNA:   3'- cUGCGUCGACUA-------CGUAAagGUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 159787 0.66 0.988496
Target:  5'- cGCGUAGCcgucUGAUuugggcuuguagccaGCAgugcUCCAGCGGCg -3'
miRNA:   3'- cUGCGUCG----ACUA---------------CGUaa--AGGUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 153234 0.66 0.987904
Target:  5'- aGGCGCgGGCgc--GCGUcggCCGGCGACg -3'
miRNA:   3'- -CUGCG-UCGacuaCGUAaa-GGUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 82720 0.66 0.987904
Target:  5'- gGugGCGG-UGGUGCAg---CGGCGGCu -3'
miRNA:   3'- -CugCGUCgACUACGUaaagGUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 155458 0.66 0.987904
Target:  5'- --aGCAGCgGGUGcCGUUUCUGGaCGAUg -3'
miRNA:   3'- cugCGUCGaCUAC-GUAAAGGUC-GCUG- -5'
2027 3' -52.5 NC_001347.2 + 39659 0.66 0.987904
Target:  5'- cACGCAGCUG--GCuUUUauaggCAGCGACg -3'
miRNA:   3'- cUGCGUCGACuaCGuAAAg----GUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 137219 0.66 0.987904
Target:  5'- uACGuCAGCaGGUGUAUauUUCCGGUaGACg -3'
miRNA:   3'- cUGC-GUCGaCUACGUA--AAGGUCG-CUG- -5'
2027 3' -52.5 NC_001347.2 + 100002 0.66 0.986323
Target:  5'- gGGCGCGGUcgcGAUGCAgcugagCCAguacGCGACc -3'
miRNA:   3'- -CUGCGUCGa--CUACGUaaa---GGU----CGCUG- -5'
2027 3' -52.5 NC_001347.2 + 197048 0.66 0.986323
Target:  5'- cACGCGGCUGccGCAg-UUCAGCucGGCg -3'
miRNA:   3'- cUGCGUCGACuaCGUaaAGGUCG--CUG- -5'
2027 3' -52.5 NC_001347.2 + 210889 0.67 0.984587
Target:  5'- cGCGcCAGCUGGcacggaguugGCGUUUCaCAGUGAUu -3'
miRNA:   3'- cUGC-GUCGACUa---------CGUAAAG-GUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 126945 0.67 0.984587
Target:  5'- cACGCAGCUGgcGCg---CCAGCu-- -3'
miRNA:   3'- cUGCGUCGACuaCGuaaaGGUCGcug -5'
2027 3' -52.5 NC_001347.2 + 184883 0.67 0.982689
Target:  5'- uGGCGCAGCUGG-GCcgUgaaaaCCAGCu-- -3'
miRNA:   3'- -CUGCGUCGACUaCGuaAa----GGUCGcug -5'
2027 3' -52.5 NC_001347.2 + 106024 0.67 0.980403
Target:  5'- cGCGCGGCUGucgGCGcUUUUCGucaugcuGCGACa -3'
miRNA:   3'- cUGCGUCGACua-CGU-AAAGGU-------CGCUG- -5'
2027 3' -52.5 NC_001347.2 + 620 0.67 0.978371
Target:  5'- gGAgGCGGCUG-UGCGc-UCCAGUGGu -3'
miRNA:   3'- -CUgCGUCGACuACGUaaAGGUCGCUg -5'
2027 3' -52.5 NC_001347.2 + 16185 0.67 0.975936
Target:  5'- aGACGgAGCUGGUGCucugCaugGGUGGCg -3'
miRNA:   3'- -CUGCgUCGACUACGuaaaGg--UCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 150565 0.67 0.975936
Target:  5'- --aGCAGCgucgGCGUUUUCAGCGuCg -3'
miRNA:   3'- cugCGUCGacuaCGUAAAGGUCGCuG- -5'
2027 3' -52.5 NC_001347.2 + 157302 0.68 0.973305
Target:  5'- --aGCAGCUGGUGCAUcaCguGCcACg -3'
miRNA:   3'- cugCGUCGACUACGUAaaGguCGcUG- -5'
2027 3' -52.5 NC_001347.2 + 2204 0.68 0.973305
Target:  5'- -uCGaCAGC-GAUgGCGggUCCGGCGGCg -3'
miRNA:   3'- cuGC-GUCGaCUA-CGUaaAGGUCGCUG- -5'
2027 3' -52.5 NC_001347.2 + 159588 0.68 0.970473
Target:  5'- aGACGCAGC-GAUGUug-UCC-GCGGa -3'
miRNA:   3'- -CUGCGUCGaCUACGuaaAGGuCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.