miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2027 5' -59.3 NC_001347.2 + 197139 0.66 0.871162
Target:  5'- gGGcCCGCCgucgu-CGCC-GCCCCGg -3'
miRNA:   3'- gCC-GGUGGaucuuuGCGGuCGGGGCa -5'
2027 5' -59.3 NC_001347.2 + 138938 0.66 0.871162
Target:  5'- uGaGCCACgaGGAAcuaaccGCGCUAGCgCCGg -3'
miRNA:   3'- gC-CGGUGgaUCUU------UGCGGUCGgGGCa -5'
2027 5' -59.3 NC_001347.2 + 19181 0.66 0.871162
Target:  5'- gCGGCCGCCcccggAGAAuCGCCAa--CCGUa -3'
miRNA:   3'- -GCCGGUGGa----UCUUuGCGGUcggGGCA- -5'
2027 5' -59.3 NC_001347.2 + 16517 0.66 0.871162
Target:  5'- uGGCC-CUUcgAGGuAGCGCCAGCCgCCc- -3'
miRNA:   3'- gCCGGuGGA--UCU-UUGCGGUCGG-GGca -5'
2027 5' -59.3 NC_001347.2 + 96925 0.66 0.871162
Target:  5'- gGGCCGCCgccAGcguccGCGCCugcacGCCgCCGUg -3'
miRNA:   3'- gCCGGUGGa--UCuu---UGCGGu----CGG-GGCA- -5'
2027 5' -59.3 NC_001347.2 + 196583 0.66 0.864053
Target:  5'- gCGGCUacgccauguACCUGGccuuAACGCCgugcuGGCCCUGc -3'
miRNA:   3'- -GCCGG---------UGGAUCu---UUGCGG-----UCGGGGCa -5'
2027 5' -59.3 NC_001347.2 + 180431 0.66 0.863332
Target:  5'- cCGGCUgcacgugGCCUGGcccGAACGCugcuucaucCAGCUCCGUu -3'
miRNA:   3'- -GCCGG-------UGGAUC---UUUGCG---------GUCGGGGCA- -5'
2027 5' -59.3 NC_001347.2 + 2025 0.66 0.852285
Target:  5'- aGGCCGCCggcggGGAcGCGCCgugcgcgauagcgggAGCCgUGg -3'
miRNA:   3'- gCCGGUGGa----UCUuUGCGG---------------UCGGgGCa -5'
2027 5' -59.3 NC_001347.2 + 167588 0.66 0.841605
Target:  5'- uGGCCGgCUGGAucAGCGCCauuugugcguaGGCCgCGc -3'
miRNA:   3'- gCCGGUgGAUCU--UUGCGG-----------UCGGgGCa -5'
2027 5' -59.3 NC_001347.2 + 169178 0.66 0.841605
Target:  5'- -cGCCGCCUcGAGACGCUGGgCUgCGUc -3'
miRNA:   3'- gcCGGUGGAuCUUUGCGGUC-GGgGCA- -5'
2027 5' -59.3 NC_001347.2 + 156627 0.66 0.840829
Target:  5'- uGGUCGCCgcUGGcgGCGCCgcugccgGGCCUCGg -3'
miRNA:   3'- gCCGGUGG--AUCuuUGCGG-------UCGGGGCa -5'
2027 5' -59.3 NC_001347.2 + 7917 0.66 0.833767
Target:  5'- aGGCCGCCU-GAGcCGgUAGCUCCu- -3'
miRNA:   3'- gCCGGUGGAuCUUuGCgGUCGGGGca -5'
2027 5' -59.3 NC_001347.2 + 154859 0.66 0.833767
Target:  5'- uCGGCCGCCgAGGuuucGAgGCCGGCCa-GUu -3'
miRNA:   3'- -GCCGGUGGaUCU----UUgCGGUCGGggCA- -5'
2027 5' -59.3 NC_001347.2 + 225535 0.67 0.825762
Target:  5'- uCGGCCGgCUGGu--CGUCGGCgCUCGg -3'
miRNA:   3'- -GCCGGUgGAUCuuuGCGGUCG-GGGCa -5'
2027 5' -59.3 NC_001347.2 + 208713 0.67 0.825762
Target:  5'- uCGGCCACC----AGCGCCguGGUCUCGg -3'
miRNA:   3'- -GCCGGUGGaucuUUGCGG--UCGGGGCa -5'
2027 5' -59.3 NC_001347.2 + 208364 0.67 0.809278
Target:  5'- gGGCCACCgaucccGCgGCCAGCaaCCCGa -3'
miRNA:   3'- gCCGGUGGaucuu-UG-CGGUCG--GGGCa -5'
2027 5' -59.3 NC_001347.2 + 196139 0.67 0.792208
Target:  5'- uCGGCCGCUgccugcCGgCGGCCCUGUg -3'
miRNA:   3'- -GCCGGUGGaucuuuGCgGUCGGGGCA- -5'
2027 5' -59.3 NC_001347.2 + 2452 0.67 0.783472
Target:  5'- gCGGCCGCgCUGGGAcGCGCUgcaccuGCaCCCGc -3'
miRNA:   3'- -GCCGGUG-GAUCUU-UGCGGu-----CG-GGGCa -5'
2027 5' -59.3 NC_001347.2 + 23245 0.68 0.764733
Target:  5'- aGGCCACCgGGAcggccugGGCGCCcccacCCCCGc -3'
miRNA:   3'- gCCGGUGGaUCU-------UUGCGGuc---GGGGCa -5'
2027 5' -59.3 NC_001347.2 + 226786 0.68 0.756552
Target:  5'- uGGCCccACCUcGgcAUGCCGGCgCCGg -3'
miRNA:   3'- gCCGG--UGGAuCuuUGCGGUCGgGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.