miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2028 3' -60.6 NC_001347.2 + 2405 0.77 0.209792
Target:  5'- gAGGCCGC-GCGGCgGCugCUGCCCg-- -3'
miRNA:   3'- -UUCGGCGaCGCCG-CGugGAUGGGaag -5'
2028 3' -60.6 NC_001347.2 + 23368 0.72 0.417884
Target:  5'- uGGCCG-UGCaGgGCACCUGCaCCUUCu -3'
miRNA:   3'- uUCGGCgACGcCgCGUGGAUG-GGAAG- -5'
2028 3' -60.6 NC_001347.2 + 31381 0.66 0.785884
Target:  5'- gAAGCCGCcaugagGCGGUggcuGCGCCU-CCUcgUCg -3'
miRNA:   3'- -UUCGGCGa-----CGCCG----CGUGGAuGGGa-AG- -5'
2028 3' -60.6 NC_001347.2 + 39131 0.66 0.776963
Target:  5'- cGGCCGUccgaGCGGCaGCAgCgUGCCCgcgUCg -3'
miRNA:   3'- uUCGGCGa---CGCCG-CGU-GgAUGGGa--AG- -5'
2028 3' -60.6 NC_001347.2 + 62779 0.66 0.730716
Target:  5'- -cGCCGUUGCGGC-CGCC-GCUCa-- -3'
miRNA:   3'- uuCGGCGACGCCGcGUGGaUGGGaag -5'
2028 3' -60.6 NC_001347.2 + 63111 0.68 0.622417
Target:  5'- uGGCCGCcGCGGC-CGCCgcuguggccggagUGCCCgUCg -3'
miRNA:   3'- uUCGGCGaCGCCGcGUGG-------------AUGGGaAG- -5'
2028 3' -60.6 NC_001347.2 + 77942 0.67 0.721195
Target:  5'- gGAGCgGCUGgaGGCGCAgCUGCgCggCa -3'
miRNA:   3'- -UUCGgCGACg-CCGCGUgGAUGgGaaG- -5'
2028 3' -60.6 NC_001347.2 + 79382 0.67 0.701948
Target:  5'- cAGCgaGUUGCuGUGCACCUcgGCCUUUCu -3'
miRNA:   3'- uUCGg-CGACGcCGCGUGGA--UGGGAAG- -5'
2028 3' -60.6 NC_001347.2 + 86264 0.67 0.701948
Target:  5'- cGGCgCGCgaagcuucgGCGGCGUGCCgcugACCCa-- -3'
miRNA:   3'- uUCG-GCGa--------CGCCGCGUGGa---UGGGaag -5'
2028 3' -60.6 NC_001347.2 + 87251 0.71 0.470399
Target:  5'- cGAGCaGUuggggaUGCGGCGCGCCgUACCCgUCu -3'
miRNA:   3'- -UUCGgCG------ACGCCGCGUGG-AUGGGaAG- -5'
2028 3' -60.6 NC_001347.2 + 88041 0.66 0.776963
Target:  5'- uGAGCgGCUGCGGaauGCGgCCcggGCCCg-- -3'
miRNA:   3'- -UUCGgCGACGCCg--CGU-GGa--UGGGaag -5'
2028 3' -60.6 NC_001347.2 + 88356 0.66 0.785884
Target:  5'- -cGCCGCUgGCGGCGCugCcGCg---- -3'
miRNA:   3'- uuCGGCGA-CGCCGCGugGaUGggaag -5'
2028 3' -60.6 NC_001347.2 + 99139 0.7 0.54519
Target:  5'- gAAGCCGCgGCGcGCGUacGCCgagACCCg-- -3'
miRNA:   3'- -UUCGGCGaCGC-CGCG--UGGa--UGGGaag -5'
2028 3' -60.6 NC_001347.2 + 101172 0.7 0.507209
Target:  5'- uGGCCGCgGCGGCGCAC--GCCa-UCa -3'
miRNA:   3'- uUCGGCGaCGCCGCGUGgaUGGgaAG- -5'
2028 3' -60.6 NC_001347.2 + 102422 0.66 0.749511
Target:  5'- uGGgCGgUGCGGCGCGCCgcaUACCg--- -3'
miRNA:   3'- uUCgGCgACGCCGCGUGG---AUGGgaag -5'
2028 3' -60.6 NC_001347.2 + 117808 0.68 0.653013
Target:  5'- cGGCCGCU-CGGCGCA-CUGCgCCa-- -3'
miRNA:   3'- uUCGGCGAcGCCGCGUgGAUG-GGaag -5'
2028 3' -60.6 NC_001347.2 + 119076 0.67 0.710641
Target:  5'- -cGCCGCUgaacccaGCGGCGCAgCCgcgcuaugcgGCCCg-- -3'
miRNA:   3'- uuCGGCGA-------CGCCGCGU-GGa---------UGGGaag -5'
2028 3' -60.6 NC_001347.2 + 129647 0.68 0.653013
Target:  5'- cAGCCGC-GCGGuCGCAuCCUGCUg-UCa -3'
miRNA:   3'- uUCGGCGaCGCC-GCGU-GGAUGGgaAG- -5'
2028 3' -60.6 NC_001347.2 + 130226 0.7 0.526071
Target:  5'- --aCCGCUGCGGCGCugucucggACCUgauccuaggcGCCCUg- -3'
miRNA:   3'- uucGGCGACGCCGCG--------UGGA----------UGGGAag -5'
2028 3' -60.6 NC_001347.2 + 136030 0.66 0.776963
Target:  5'- cGGGCCGCgccCGGUGC-CCgGCCCa-- -3'
miRNA:   3'- -UUCGGCGac-GCCGCGuGGaUGGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.