miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2028 3' -60.6 NC_001347.2 + 208817 0.71 0.479478
Target:  5'- cAGCCGCUGCGcCGCGCC-GCCgUccUCg -3'
miRNA:   3'- uUCGGCGACGCcGCGUGGaUGGgA--AG- -5'
2028 3' -60.6 NC_001347.2 + 203906 0.7 0.516605
Target:  5'- -cGCCGCgUGCGGauagGCACCUGgaCUUCa -3'
miRNA:   3'- uuCGGCG-ACGCCg---CGUGGAUggGAAG- -5'
2028 3' -60.6 NC_001347.2 + 201565 0.67 0.682483
Target:  5'- cGAGCCGCUGCguuucgucGGCaGCAUCUGCaCUa- -3'
miRNA:   3'- -UUCGGCGACG--------CCG-CGUGGAUGgGAag -5'
2028 3' -60.6 NC_001347.2 + 198977 0.66 0.767922
Target:  5'- uGAGCCGCgGCgauucgGGCGUGCCgcgaugccgcaGCUCUUCg -3'
miRNA:   3'- -UUCGGCGaCG------CCGCGUGGa----------UGGGAAG- -5'
2028 3' -60.6 NC_001347.2 + 187800 0.67 0.692239
Target:  5'- cAAGCUGCUggucaaggaGCuGCGCAUgUGCCUUUCc -3'
miRNA:   3'- -UUCGGCGA---------CGcCGCGUGgAUGGGAAG- -5'
2028 3' -60.6 NC_001347.2 + 187359 0.66 0.730716
Target:  5'- uGGCCGUggcgcgucGCGGCuaCACUUACCCgUUCg -3'
miRNA:   3'- uUCGGCGa-------CGCCGc-GUGGAUGGG-AAG- -5'
2028 3' -60.6 NC_001347.2 + 168356 0.67 0.721195
Target:  5'- -cGCCGCcGCGGUGCcGCCgcuCUgUUCg -3'
miRNA:   3'- uuCGGCGaCGCCGCG-UGGau-GGgAAG- -5'
2028 3' -60.6 NC_001347.2 + 166068 0.66 0.785884
Target:  5'- gGAGUCGCgGCGGUugggGCGCCgauuCCCa-- -3'
miRNA:   3'- -UUCGGCGaCGCCG----CGUGGau--GGGaag -5'
2028 3' -60.6 NC_001347.2 + 160956 0.68 0.653013
Target:  5'- -cGCCGCUacaGCGGCGCcGCCaUGCCa--- -3'
miRNA:   3'- uuCGGCGA---CGCCGCG-UGG-AUGGgaag -5'
2028 3' -60.6 NC_001347.2 + 157595 0.66 0.758769
Target:  5'- -cGCCGuCUGCGGCucUACCcGCCCg-- -3'
miRNA:   3'- uuCGGC-GACGCCGc-GUGGaUGGGaag -5'
2028 3' -60.6 NC_001347.2 + 156631 0.69 0.564528
Target:  5'- -cGCCGCUgGCGGCGC-CgCUGCCg--- -3'
miRNA:   3'- uuCGGCGA-CGCCGCGuG-GAUGGgaag -5'
2028 3' -60.6 NC_001347.2 + 155136 0.7 0.497887
Target:  5'- cGGCCGCcGCGGCG-GCCaGCgCUUCg -3'
miRNA:   3'- uUCGGCGaCGCCGCgUGGaUGgGAAG- -5'
2028 3' -60.6 NC_001347.2 + 153483 0.66 0.749511
Target:  5'- aAAGuCCGCca-GGUGCACUUugCCUUUg -3'
miRNA:   3'- -UUC-GGCGacgCCGCGUGGAugGGAAG- -5'
2028 3' -60.6 NC_001347.2 + 150329 0.66 0.767922
Target:  5'- -cGCUGCUGgaCGaGUGCGCCUGCCg--- -3'
miRNA:   3'- uuCGGCGAC--GC-CGCGUGGAUGGgaag -5'
2028 3' -60.6 NC_001347.2 + 139464 0.69 0.593849
Target:  5'- cGGCgGCgagGCGGUGCGCgUGCCgUUg -3'
miRNA:   3'- uUCGgCGa--CGCCGCGUGgAUGGgAAg -5'
2028 3' -60.6 NC_001347.2 + 136030 0.66 0.776963
Target:  5'- cGGGCCGCgccCGGUGC-CCgGCCCa-- -3'
miRNA:   3'- -UUCGGCGac-GCCGCGuGGaUGGGaag -5'
2028 3' -60.6 NC_001347.2 + 130226 0.7 0.526071
Target:  5'- --aCCGCUGCGGCGCugucucggACCUgauccuaggcGCCCUg- -3'
miRNA:   3'- uucGGCGACGCCGCG--------UGGA----------UGGGAag -5'
2028 3' -60.6 NC_001347.2 + 129647 0.68 0.653013
Target:  5'- cAGCCGC-GCGGuCGCAuCCUGCUg-UCa -3'
miRNA:   3'- uUCGGCGaCGCC-GCGU-GGAUGGgaAG- -5'
2028 3' -60.6 NC_001347.2 + 119076 0.67 0.710641
Target:  5'- -cGCCGCUgaacccaGCGGCGCAgCCgcgcuaugcgGCCCg-- -3'
miRNA:   3'- uuCGGCGA-------CGCCGCGU-GGa---------UGGGaag -5'
2028 3' -60.6 NC_001347.2 + 117808 0.68 0.653013
Target:  5'- cGGCCGCU-CGGCGCA-CUGCgCCa-- -3'
miRNA:   3'- uUCGGCGAcGCCGCGUgGAUG-GGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.