miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20283 3' -53.9 NC_004687.1 + 17359 0.66 0.958802
Target:  5'- aAGCACCUgCCGCuGCCGgUgCACuaUCGCg -3'
miRNA:   3'- gUCGUGGAaGGUG-UGGUgA-GUG--AGUG- -5'
20283 3' -53.9 NC_004687.1 + 85384 0.66 0.958802
Target:  5'- gGGCGCCUUCgGCAUCgGCguggucgCGCUgGCc -3'
miRNA:   3'- gUCGUGGAAGgUGUGG-UGa------GUGAgUG- -5'
20283 3' -53.9 NC_004687.1 + 23882 0.66 0.958802
Target:  5'- aAGgACC--CCGCcugugGCuCACUCACUCACa -3'
miRNA:   3'- gUCgUGGaaGGUG-----UG-GUGAGUGAGUG- -5'
20283 3' -53.9 NC_004687.1 + 49024 0.66 0.958802
Target:  5'- cCGGCGCCacCCAUGCCGCcccagcagaUCGC-CGCg -3'
miRNA:   3'- -GUCGUGGaaGGUGUGGUG---------AGUGaGUG- -5'
20283 3' -53.9 NC_004687.1 + 21929 0.66 0.958802
Target:  5'- uCAGuCAUCgaCC-CACCACUCA-UCACg -3'
miRNA:   3'- -GUC-GUGGaaGGuGUGGUGAGUgAGUG- -5'
20283 3' -53.9 NC_004687.1 + 133852 0.66 0.954941
Target:  5'- cCAGCACa--CCGcCACCugU-GCUCACa -3'
miRNA:   3'- -GUCGUGgaaGGU-GUGGugAgUGAGUG- -5'
20283 3' -53.9 NC_004687.1 + 27533 0.66 0.954941
Target:  5'- uGGCGCa-UCCAC-CCGCUgccgcUACUCGCc -3'
miRNA:   3'- gUCGUGgaAGGUGuGGUGA-----GUGAGUG- -5'
20283 3' -53.9 NC_004687.1 + 134141 0.66 0.954941
Target:  5'- cCGGCGCCUUaCCAC-CCGUUCAaggCGCc -3'
miRNA:   3'- -GUCGUGGAA-GGUGuGGUGAGUga-GUG- -5'
20283 3' -53.9 NC_004687.1 + 75708 0.66 0.954941
Target:  5'- aGGCGCCcggCCAgcCGCCACUCcaugucgaaccGCUCGa -3'
miRNA:   3'- gUCGUGGaa-GGU--GUGGUGAG-----------UGAGUg -5'
20283 3' -53.9 NC_004687.1 + 615 0.66 0.954941
Target:  5'- cCAGCGCCaucauUUUCGCGCCucgaUCuuCUCGCg -3'
miRNA:   3'- -GUCGUGG-----AAGGUGUGGug--AGu-GAGUG- -5'
20283 3' -53.9 NC_004687.1 + 86522 0.66 0.950843
Target:  5'- cCGGCGCUcaacCCGgACCACUCGCcgUACc -3'
miRNA:   3'- -GUCGUGGaa--GGUgUGGUGAGUGa-GUG- -5'
20283 3' -53.9 NC_004687.1 + 44363 0.66 0.946502
Target:  5'- gAGUGCaCUUCCGCACCGC-CGCc--- -3'
miRNA:   3'- gUCGUG-GAAGGUGUGGUGaGUGagug -5'
20283 3' -53.9 NC_004687.1 + 80769 0.66 0.946502
Target:  5'- gGGCACCcUCUACAUCGC-CGCcgaCACc -3'
miRNA:   3'- gUCGUGGaAGGUGUGGUGaGUGa--GUG- -5'
20283 3' -53.9 NC_004687.1 + 89780 0.66 0.946502
Target:  5'- aCAGCGCCgaCgACACCAC-CGCgacCAUc -3'
miRNA:   3'- -GUCGUGGaaGgUGUGGUGaGUGa--GUG- -5'
20283 3' -53.9 NC_004687.1 + 41127 0.66 0.945152
Target:  5'- gCAGCGCCUuguagcuggacccgUCCAucCGCCAgUCGgggucCUCACc -3'
miRNA:   3'- -GUCGUGGA--------------AGGU--GUGGUgAGU-----GAGUG- -5'
20283 3' -53.9 NC_004687.1 + 78426 0.66 0.941917
Target:  5'- gCAGCgcucgGCCUUcCCGgGCCGCUaCGCcgCACa -3'
miRNA:   3'- -GUCG-----UGGAA-GGUgUGGUGA-GUGa-GUG- -5'
20283 3' -53.9 NC_004687.1 + 50516 0.66 0.941917
Target:  5'- gCGGaCGCUcgUUCCGCGCUACgccaaCACUCAg -3'
miRNA:   3'- -GUC-GUGG--AAGGUGUGGUGa----GUGAGUg -5'
20283 3' -53.9 NC_004687.1 + 128826 0.66 0.937084
Target:  5'- gCAGCgucGCCUggacaaggcCCGCACCccgaUCGCUCGCc -3'
miRNA:   3'- -GUCG---UGGAa--------GGUGUGGug--AGUGAGUG- -5'
20283 3' -53.9 NC_004687.1 + 53291 0.66 0.937084
Target:  5'- -cGCagGCCUcCCGCgACUACgUCGCUCACc -3'
miRNA:   3'- guCG--UGGAaGGUG-UGGUG-AGUGAGUG- -5'
20283 3' -53.9 NC_004687.1 + 18127 0.66 0.937084
Target:  5'- gAGCGCgg-CCACGCCGCcagCACgacCACg -3'
miRNA:   3'- gUCGUGgaaGGUGUGGUGa--GUGa--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.