miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20283 5' -53.5 NC_004687.1 + 29182 0.66 0.963711
Target:  5'- cAGGUUCc---GCAGCGGUGGGuGaCAGCc -3'
miRNA:   3'- -UCUAGGuacuCGUCGCCAUUC-C-GUCG- -5'
20283 5' -53.5 NC_004687.1 + 146334 0.66 0.963711
Target:  5'- aGGAUCaCGUGcucaaGGCAGuCGcGUGGGGCAa- -3'
miRNA:   3'- -UCUAG-GUAC-----UCGUC-GC-CAUUCCGUcg -5'
20283 5' -53.5 NC_004687.1 + 8945 0.66 0.963711
Target:  5'- cGGcagCCAUG-GCGGCGGc--GGUGGCu -3'
miRNA:   3'- -UCua-GGUACuCGUCGCCauuCCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 20073 0.66 0.963711
Target:  5'- cGAUUCGUGAGCuGCaGGccuaccGGGCcGCg -3'
miRNA:   3'- uCUAGGUACUCGuCG-CCau----UCCGuCG- -5'
20283 5' -53.5 NC_004687.1 + 70912 0.66 0.963366
Target:  5'- cGGGUCCggcgcguagGUGAcGCgcugcucGGCGGUGcgcGGCGGCu -3'
miRNA:   3'- -UCUAGG---------UACU-CG-------UCGCCAUu--CCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 95539 0.66 0.960159
Target:  5'- cAGAgcaCCAucucUGGGCcgcguAGCGGUGuAGaGCAGCu -3'
miRNA:   3'- -UCUa--GGU----ACUCG-----UCGCCAU-UC-CGUCG- -5'
20283 5' -53.5 NC_004687.1 + 49674 0.66 0.960159
Target:  5'- cGGcgUCGgaGGC-GCGGUccAGGGCAGCg -3'
miRNA:   3'- -UCuaGGUacUCGuCGCCA--UUCCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 145514 0.66 0.960159
Target:  5'- cGGAgcaagCCGUcaaGGGC-GCGGUcaAGGGUGGCa -3'
miRNA:   3'- -UCUa----GGUA---CUCGuCGCCA--UUCCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 144513 0.66 0.960159
Target:  5'- gAGAUCUG-GGGC-GUGGUGGcucaccacaccGGCAGCu -3'
miRNA:   3'- -UCUAGGUaCUCGuCGCCAUU-----------CCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 73865 0.66 0.960159
Target:  5'- cGGUCCAgcAGCAGCuGUccGGCAucGCu -3'
miRNA:   3'- uCUAGGUacUCGUCGcCAuuCCGU--CG- -5'
20283 5' -53.5 NC_004687.1 + 121963 0.66 0.960159
Target:  5'- gAGAUCU---GGCcaaGGCGGU--GGCGGCg -3'
miRNA:   3'- -UCUAGGuacUCG---UCGCCAuuCCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 12413 0.66 0.956373
Target:  5'- aAGG-CCAUcAGCuGGCaGGUGAucGGCAGCg -3'
miRNA:   3'- -UCUaGGUAcUCG-UCG-CCAUU--CCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 70642 0.66 0.956373
Target:  5'- -aGUUCAUGGccGCAGCGGUcgcGGGCaAGUc -3'
miRNA:   3'- ucUAGGUACU--CGUCGCCAu--UCCG-UCG- -5'
20283 5' -53.5 NC_004687.1 + 545 0.66 0.952349
Target:  5'- uAGGUC----GGCAGCGGcgGGGGCGGg -3'
miRNA:   3'- -UCUAGguacUCGUCGCCa-UUCCGUCg -5'
20283 5' -53.5 NC_004687.1 + 96005 0.66 0.952349
Target:  5'- -aGUCCA-GGGCAGCGGUuguucGUAGUc -3'
miRNA:   3'- ucUAGGUaCUCGUCGCCAuuc--CGUCG- -5'
20283 5' -53.5 NC_004687.1 + 139683 0.66 0.951516
Target:  5'- gGGGUCCAggcgggcUGGGCcaGGUGGgcgAAGGCcugucgcGGCg -3'
miRNA:   3'- -UCUAGGU-------ACUCG--UCGCCa--UUCCG-------UCG- -5'
20283 5' -53.5 NC_004687.1 + 61557 0.66 0.948084
Target:  5'- aGGA-CCGUccGgGGCGGUAGGuGCAGUc -3'
miRNA:   3'- -UCUaGGUAcuCgUCGCCAUUC-CGUCG- -5'
20283 5' -53.5 NC_004687.1 + 98008 0.66 0.948084
Target:  5'- aGGAUCCucucgGAucuuGUcgucccauuccuGGCGGUAgcGGGCGGCa -3'
miRNA:   3'- -UCUAGGua---CU----CG------------UCGCCAU--UCCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 153335 0.66 0.948084
Target:  5'- cGGAggcUCCG-GGGguGCGGUcgccaagaccGAcGGCAGCc -3'
miRNA:   3'- -UCU---AGGUaCUCguCGCCA----------UU-CCGUCG- -5'
20283 5' -53.5 NC_004687.1 + 116466 0.66 0.947644
Target:  5'- aGGAUcgCCggGAGCacccggaGGCGGaccGGCAGCg -3'
miRNA:   3'- -UCUA--GGuaCUCG-------UCGCCauuCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.