miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2030 3' -57.2 NC_001347.2 + 100214 0.66 0.914777
Target:  5'- uAGCcgGAGaCGGCGGUuacguagucgUCUACCUCGc- -3'
miRNA:   3'- -UCGuaCUC-GUUGCCG----------AGGUGGAGCca -5'
2030 3' -57.2 NC_001347.2 + 82722 0.66 0.914777
Target:  5'- uGGCggugGUGcAGCGGCGGCUgagcggUCAuCCUCGGa -3'
miRNA:   3'- -UCG----UAC-UCGUUGCCGA------GGU-GGAGCCa -5'
2030 3' -57.2 NC_001347.2 + 148209 0.66 0.914777
Target:  5'- uGCAUccaCGGCGGCUCCGCCUUa-- -3'
miRNA:   3'- uCGUAcucGUUGCCGAGGUGGAGcca -5'
2030 3' -57.2 NC_001347.2 + 170174 0.66 0.913059
Target:  5'- cGCGUGAGUAGCGGUcugagcaccuuuaaUCCGgC-CGGc -3'
miRNA:   3'- uCGUACUCGUUGCCG--------------AGGUgGaGCCa -5'
2030 3' -57.2 NC_001347.2 + 85288 0.66 0.908972
Target:  5'- aGGUAUcGGCGGCGGCgaaUCGCC-CGGg -3'
miRNA:   3'- -UCGUAcUCGUUGCCGa--GGUGGaGCCa -5'
2030 3' -57.2 NC_001347.2 + 115041 0.66 0.902942
Target:  5'- cGCGUccGAcGCGACGGUguuUUCGCCgUCGGUg -3'
miRNA:   3'- uCGUA--CU-CGUUGCCG---AGGUGG-AGCCA- -5'
2030 3' -57.2 NC_001347.2 + 182303 0.66 0.902942
Target:  5'- uGCcgGGGCGGCuGCUCCAgguCCgCGGa -3'
miRNA:   3'- uCGuaCUCGUUGcCGAGGU---GGaGCCa -5'
2030 3' -57.2 NC_001347.2 + 129498 0.66 0.896691
Target:  5'- cGCGUcuGCAgcGCGGCgCCGCCUCGu- -3'
miRNA:   3'- uCGUAcuCGU--UGCCGaGGUGGAGCca -5'
2030 3' -57.2 NC_001347.2 + 170136 0.67 0.883534
Target:  5'- cGCGUGA-CAGCGGUcCCGCCgugcccagucgCGGUg -3'
miRNA:   3'- uCGUACUcGUUGCCGaGGUGGa----------GCCA- -5'
2030 3' -57.2 NC_001347.2 + 16202 0.67 0.883534
Target:  5'- uGCAUGGGUGGCGGUaCgCGCCUCu-- -3'
miRNA:   3'- uCGUACUCGUUGCCGaG-GUGGAGcca -5'
2030 3' -57.2 NC_001347.2 + 156800 0.67 0.876636
Target:  5'- cGGCAgcGGCAGCGGCgggCCaggACgUCGGa -3'
miRNA:   3'- -UCGUacUCGUUGCCGa--GG---UGgAGCCa -5'
2030 3' -57.2 NC_001347.2 + 81693 0.67 0.876636
Target:  5'- gAGCGaGAGCGcgcAgGGUUCCACCUCc-- -3'
miRNA:   3'- -UCGUaCUCGU---UgCCGAGGUGGAGcca -5'
2030 3' -57.2 NC_001347.2 + 115209 0.67 0.874526
Target:  5'- cGCGUcGGCGuaacaACGGCUggaggacuuuuucaCCGCCUCGGc -3'
miRNA:   3'- uCGUAcUCGU-----UGCCGA--------------GGUGGAGCCa -5'
2030 3' -57.2 NC_001347.2 + 148591 0.67 0.869531
Target:  5'- cGUAucUGAGCGGCGGCgUgACCggCGGUg -3'
miRNA:   3'- uCGU--ACUCGUUGCCGaGgUGGa-GCCA- -5'
2030 3' -57.2 NC_001347.2 + 174843 0.67 0.861481
Target:  5'- uGCAUGAagcGCGAgGGUUCCAUCUucagcuggcgagaCGGUa -3'
miRNA:   3'- uCGUACU---CGUUgCCGAGGUGGA-------------GCCA- -5'
2030 3' -57.2 NC_001347.2 + 171299 0.68 0.854717
Target:  5'- cGCGUGAGCAGCGcuaCUCgCugUUUGGg -3'
miRNA:   3'- uCGUACUCGUUGCc--GAG-GugGAGCCa -5'
2030 3' -57.2 NC_001347.2 + 109526 0.68 0.854717
Target:  5'- cAGCAUccucGGCGACGGCgUgCACgUCGGg -3'
miRNA:   3'- -UCGUAc---UCGUUGCCG-AgGUGgAGCCa -5'
2030 3' -57.2 NC_001347.2 + 38077 0.68 0.84702
Target:  5'- cGCAgaaaGuGCGACaGCUCCGCCgccagCGGg -3'
miRNA:   3'- uCGUa---CuCGUUGcCGAGGUGGa----GCCa -5'
2030 3' -57.2 NC_001347.2 + 97398 0.68 0.839137
Target:  5'- cGCGUG-GCAcucugcaacaGCGGCgcuagacgcuccUCCAUCUCGGg -3'
miRNA:   3'- uCGUACuCGU----------UGCCG------------AGGUGGAGCCa -5'
2030 3' -57.2 NC_001347.2 + 117482 0.68 0.822842
Target:  5'- cAGCAgacaGGCGGCGGCuUCCAaaUCGGa -3'
miRNA:   3'- -UCGUac--UCGUUGCCG-AGGUggAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.