miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2031 3' -55.7 NC_001347.2 + 36905 0.66 0.970257
Target:  5'- -aUUCCCAucuuGGGcgcGACGCGGaCGcaGCGACa -3'
miRNA:   3'- caGAGGGU----UCC---UUGCGCCaGC--UGCUG- -5'
2031 3' -55.7 NC_001347.2 + 173468 0.66 0.967338
Target:  5'- uUCUCaCCGAGGAaccuuuccaGCGUGG-CGAucccuuCGACa -3'
miRNA:   3'- cAGAG-GGUUCCU---------UGCGCCaGCU------GCUG- -5'
2031 3' -55.7 NC_001347.2 + 5672 0.66 0.964222
Target:  5'- uUCgCCCGAGGAagACGC---CGACGACu -3'
miRNA:   3'- cAGaGGGUUCCU--UGCGccaGCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 196112 0.66 0.964222
Target:  5'- uUCUggagCCCGAGGAGCGCGaacucaUCGGCcGCu -3'
miRNA:   3'- cAGA----GGGUUCCUUGCGCc-----AGCUGcUG- -5'
2031 3' -55.7 NC_001347.2 + 66565 0.66 0.960904
Target:  5'- cGUC-CUCGAGGAACGaGGgcccucgcCGGCGGCc -3'
miRNA:   3'- -CAGaGGGUUCCUUGCgCCa-------GCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 128244 0.66 0.957015
Target:  5'- gGUCUCaCCGAGGugcuCGCcuaucaccuguacGGUggCGACGGCg -3'
miRNA:   3'- -CAGAG-GGUUCCuu--GCG-------------CCA--GCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 207101 0.67 0.945523
Target:  5'- cUCUCgCCAAGGu-CGCGGacaguuccUCGuCGGCg -3'
miRNA:   3'- cAGAG-GGUUCCuuGCGCC--------AGCuGCUG- -5'
2031 3' -55.7 NC_001347.2 + 36564 0.67 0.941133
Target:  5'- -cUUCCCAugcGGGAACuggccuggcgGCGGguagcCGACGACu -3'
miRNA:   3'- caGAGGGU---UCCUUG----------CGCCa----GCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 149597 0.67 0.936521
Target:  5'- --aUCCCAaacGGGAACGaUGGUCGG-GGCu -3'
miRNA:   3'- cagAGGGU---UCCUUGC-GCCAGCUgCUG- -5'
2031 3' -55.7 NC_001347.2 + 151945 0.67 0.936521
Target:  5'- gGUUUCCCGGucGGACGCGaUUGAUGGCa -3'
miRNA:   3'- -CAGAGGGUUc-CUUGCGCcAGCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 43998 0.68 0.91916
Target:  5'- -gUUCCCcaggaccagccuacGAGGAacggauaACGCGGUggCGACGGCa -3'
miRNA:   3'- caGAGGG--------------UUCCU-------UGCGCCA--GCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 195658 0.68 0.915827
Target:  5'- uGUCgcacgCCCGAGGAucugGCGGcCGcCGGCg -3'
miRNA:   3'- -CAGa----GGGUUCCUug--CGCCaGCuGCUG- -5'
2031 3' -55.7 NC_001347.2 + 156847 0.68 0.915827
Target:  5'- -cCUCUgGAGGAgcACGUGaGUCGuCGGCg -3'
miRNA:   3'- caGAGGgUUCCU--UGCGC-CAGCuGCUG- -5'
2031 3' -55.7 NC_001347.2 + 75389 0.68 0.910092
Target:  5'- cUCUCCCccgcuccaagcGGGAGCgGCGGccguggCGGCGGCa -3'
miRNA:   3'- cAGAGGGu----------UCCUUG-CGCCa-----GCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 190374 0.68 0.904136
Target:  5'- uGUCgCCCAGaaaGAACGUGGUuguucCGGCGGCg -3'
miRNA:   3'- -CAGaGGGUUc--CUUGCGCCA-----GCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 142979 0.68 0.904136
Target:  5'- cGUCgCCCGaggcggAGGAGC-CGG-CGGCGGCg -3'
miRNA:   3'- -CAGaGGGU------UCCUUGcGCCaGCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 99568 0.68 0.897958
Target:  5'- uGUgaCCCGcgcucgucgucGGGAGCGCGGUgGAaGACa -3'
miRNA:   3'- -CAgaGGGU-----------UCCUUGCGCCAgCUgCUG- -5'
2031 3' -55.7 NC_001347.2 + 102158 0.69 0.891564
Target:  5'- aUCUgCCCGAGGAuCGCGGUUacaccacgGugGAa -3'
miRNA:   3'- cAGA-GGGUUCCUuGCGCCAG--------CugCUg -5'
2031 3' -55.7 NC_001347.2 + 66780 0.7 0.833062
Target:  5'- cGUCcgCCCGacGGuGGugGCGG-CGGCGGCa -3'
miRNA:   3'- -CAGa-GGGU--UC-CUugCGCCaGCUGCUG- -5'
2031 3' -55.7 NC_001347.2 + 181764 0.71 0.808121
Target:  5'- --gUUUCAAGGugugcGACGuCGGUCGACGGCa -3'
miRNA:   3'- cagAGGGUUCC-----UUGC-GCCAGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.