miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20317 3' -51.5 NC_004687.1 + 13126 0.66 0.990916
Target:  5'- uGC-CGCAGCGG-GUUGGCAGCc---- -3'
miRNA:   3'- -CGaGCGUCGUCuUAGCUGUCGucauc -5'
20317 3' -51.5 NC_004687.1 + 146701 0.66 0.990916
Target:  5'- cGCUCG-AGCccGGGAcguacUCGuCGGCGGUGGc -3'
miRNA:   3'- -CGAGCgUCG--UCUU-----AGCuGUCGUCAUC- -5'
20317 3' -51.5 NC_004687.1 + 36783 0.66 0.990916
Target:  5'- -gUCGCAGCugccGGAGUuCGACgagugggccaugGGCAGUGa -3'
miRNA:   3'- cgAGCGUCG----UCUUA-GCUG------------UCGUCAUc -5'
20317 3' -51.5 NC_004687.1 + 16942 0.66 0.990916
Target:  5'- aGCUCGCGGCcaAGAGUCGcgaGGUAcugAGa -3'
miRNA:   3'- -CGAGCGUCG--UCUUAGCug-UCGUca-UC- -5'
20317 3' -51.5 NC_004687.1 + 143190 0.66 0.990793
Target:  5'- -gUCGguGCGGAcccagccGUUGGCGGCGGc-- -3'
miRNA:   3'- cgAGCguCGUCU-------UAGCUGUCGUCauc -5'
20317 3' -51.5 NC_004687.1 + 86329 0.66 0.989618
Target:  5'- cGCcCGCAGCccGAUCGACu-CGGUGGc -3'
miRNA:   3'- -CGaGCGUCGucUUAGCUGucGUCAUC- -5'
20317 3' -51.5 NC_004687.1 + 106745 0.66 0.989618
Target:  5'- uGCUUuuuGCAGggUCGACAGCu---- -3'
miRNA:   3'- -CGAGcguCGUCuuAGCUGUCGucauc -5'
20317 3' -51.5 NC_004687.1 + 108492 0.66 0.989618
Target:  5'- -gUCgGCAGCGGuccgaacggCGGCGGCAGUccGGg -3'
miRNA:   3'- cgAG-CGUCGUCuua------GCUGUCGUCA--UC- -5'
20317 3' -51.5 NC_004687.1 + 8943 0.66 0.98818
Target:  5'- -aUCgGCAGCcauggCGGCGGCGGUGGc -3'
miRNA:   3'- cgAG-CGUCGucuuaGCUGUCGUCAUC- -5'
20317 3' -51.5 NC_004687.1 + 88086 0.66 0.986591
Target:  5'- uGC-CGCAGCuGAucaccuUCGACGGCAc--- -3'
miRNA:   3'- -CGaGCGUCGuCUu-----AGCUGUCGUcauc -5'
20317 3' -51.5 NC_004687.1 + 149504 0.66 0.986591
Target:  5'- gGCUCGUAGUgu--UCGACAGUgccgcccaGGUGGc -3'
miRNA:   3'- -CGAGCGUCGucuuAGCUGUCG--------UCAUC- -5'
20317 3' -51.5 NC_004687.1 + 75136 0.66 0.986591
Target:  5'- ---aGCGGUAGAgauugccgguGUCGGCGGCGauGUAGa -3'
miRNA:   3'- cgagCGUCGUCU----------UAGCUGUCGU--CAUC- -5'
20317 3' -51.5 NC_004687.1 + 10577 0.66 0.986591
Target:  5'- aGCUCaacCAGCAGAAggccgCGACcGCcGUGGc -3'
miRNA:   3'- -CGAGc--GUCGUCUUa----GCUGuCGuCAUC- -5'
20317 3' -51.5 NC_004687.1 + 122750 0.66 0.986591
Target:  5'- gGCggCGCAGCAGGAa-GACAaCGGUAu -3'
miRNA:   3'- -CGa-GCGUCGUCUUagCUGUcGUCAUc -5'
20317 3' -51.5 NC_004687.1 + 52727 0.66 0.984844
Target:  5'- -gUCGCGGUcGAG--GGCGGCGGUGGc -3'
miRNA:   3'- cgAGCGUCGuCUUagCUGUCGUCAUC- -5'
20317 3' -51.5 NC_004687.1 + 133171 0.66 0.984844
Target:  5'- aGCUCGaccacggcgcCGGuCAGGgcGUCGACAGCGGc-- -3'
miRNA:   3'- -CGAGC----------GUC-GUCU--UAGCUGUCGUCauc -5'
20317 3' -51.5 NC_004687.1 + 35031 0.66 0.984844
Target:  5'- --aCGCAGCGG---CGGCAGCAGc-- -3'
miRNA:   3'- cgaGCGUCGUCuuaGCUGUCGUCauc -5'
20317 3' -51.5 NC_004687.1 + 86124 0.66 0.984844
Target:  5'- cGgUCGCGGCGGAcUCGACcuacuaccaGGUGGa -3'
miRNA:   3'- -CgAGCGUCGUCUuAGCUGucg------UCAUC- -5'
20317 3' -51.5 NC_004687.1 + 82111 0.66 0.984844
Target:  5'- ---gGCAGCGGucgCGGCGGCAGc-- -3'
miRNA:   3'- cgagCGUCGUCuuaGCUGUCGUCauc -5'
20317 3' -51.5 NC_004687.1 + 61541 0.66 0.982928
Target:  5'- aGCUC-CGGCGGAcuccaggaccGUCcGgGGCGGUAGg -3'
miRNA:   3'- -CGAGcGUCGUCU----------UAGcUgUCGUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.