miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2032 3' -58.3 NC_001347.2 + 150261 0.66 0.895977
Target:  5'- cGCGCGGCUggcuaaaauUCCGUUGCGg-CguGUCa -3'
miRNA:   3'- -UGCGUCGG---------AGGCAACGCaaGguCGGa -5'
2032 3' -58.3 NC_001347.2 + 166624 0.66 0.895977
Target:  5'- cACGCcGuCCUCCGagagGCGcgcCCGGCCa -3'
miRNA:   3'- -UGCGuC-GGAGGCaa--CGCaa-GGUCGGa -5'
2032 3' -58.3 NC_001347.2 + 38397 0.66 0.895977
Target:  5'- -gGCGGCCUCCGUcucCGUgCCGcucGCCg -3'
miRNA:   3'- ugCGUCGGAGGCAac-GCAaGGU---CGGa -5'
2032 3' -58.3 NC_001347.2 + 38014 0.66 0.894067
Target:  5'- cGCGCGGCCUCgGcgGCGggcgCCGacucgcgucccagcGCCa -3'
miRNA:   3'- -UGCGUCGGAGgCaaCGCaa--GGU--------------CGGa -5'
2032 3' -58.3 NC_001347.2 + 87036 0.66 0.889534
Target:  5'- -aGCAacGCCUCCGUgcccaUGCGcaccucgUCCAGaCCg -3'
miRNA:   3'- ugCGU--CGGAGGCA-----ACGCa------AGGUC-GGa -5'
2032 3' -58.3 NC_001347.2 + 94879 0.66 0.880841
Target:  5'- gUGCGGCCUCCucgaUGgGUUCCAacagguggcuacgcGCCa -3'
miRNA:   3'- uGCGUCGGAGGca--ACgCAAGGU--------------CGGa -5'
2032 3' -58.3 NC_001347.2 + 68133 0.66 0.876014
Target:  5'- gACGCuguuccuGCCUucgCCGUUGCuGUUCCuccgcagaagGGCCg -3'
miRNA:   3'- -UGCGu------CGGA---GGCAACG-CAAGG----------UCGGa -5'
2032 3' -58.3 NC_001347.2 + 62767 0.66 0.868947
Target:  5'- -gGCGGCCgaccccgCCGUUGCGgccgccgcUCaCAGUCUa -3'
miRNA:   3'- ugCGUCGGa------GGCAACGCa-------AG-GUCGGA- -5'
2032 3' -58.3 NC_001347.2 + 30597 0.67 0.84657
Target:  5'- -gGCGGCUUCC--UGCGg-CCGGCCg -3'
miRNA:   3'- ugCGUCGGAGGcaACGCaaGGUCGGa -5'
2032 3' -58.3 NC_001347.2 + 168224 0.68 0.797085
Target:  5'- cCGC-GCCUCCGUggcaGCcguUUCCAGCUg -3'
miRNA:   3'- uGCGuCGGAGGCAa---CGc--AAGGUCGGa -5'
2032 3' -58.3 NC_001347.2 + 40535 0.68 0.788305
Target:  5'- gGCGC-GCUgCCGgUGCGUUCCAcgguccuuGCCUg -3'
miRNA:   3'- -UGCGuCGGaGGCaACGCAAGGU--------CGGA- -5'
2032 3' -58.3 NC_001347.2 + 98366 0.68 0.779394
Target:  5'- cCGuCAGCa--CGUUgGCGUUCCGGCCc -3'
miRNA:   3'- uGC-GUCGgagGCAA-CGCAAGGUCGGa -5'
2032 3' -58.3 NC_001347.2 + 36535 0.68 0.779394
Target:  5'- uCGguGaCCUCuCGgucgGCGUgUCCAGCCUu -3'
miRNA:   3'- uGCguC-GGAG-GCaa--CGCA-AGGUCGGA- -5'
2032 3' -58.3 NC_001347.2 + 147916 0.69 0.733151
Target:  5'- gGCGCgguGGCCUCCGUggucgaagGCGUUgCCA-CCUu -3'
miRNA:   3'- -UGCG---UCGGAGGCAa-------CGCAA-GGUcGGA- -5'
2032 3' -58.3 NC_001347.2 + 21352 0.7 0.655325
Target:  5'- uGCGC-GCCUCCGUccucgucGCcUUCCAGCUUa -3'
miRNA:   3'- -UGCGuCGGAGGCAa------CGcAAGGUCGGA- -5'
2032 3' -58.3 NC_001347.2 + 151341 0.7 0.655325
Target:  5'- cCGCAGgCUCUGguggcGCGUgggcCCAGCCUg -3'
miRNA:   3'- uGCGUCgGAGGCaa---CGCAa---GGUCGGA- -5'
2032 3' -58.3 NC_001347.2 + 119092 0.71 0.615739
Target:  5'- gGCGCAGCCg-CGcuaUGCGgcCCGGCCUc -3'
miRNA:   3'- -UGCGUCGGagGCa--ACGCaaGGUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.