Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2032 | 3' | -58.3 | NC_001347.2 | + | 119092 | 0.71 | 0.615739 |
Target: 5'- gGCGCAGCCg-CGcuaUGCGgcCCGGCCUc -3' miRNA: 3'- -UGCGUCGGagGCa--ACGCaaGGUCGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 151341 | 0.7 | 0.655325 |
Target: 5'- cCGCAGgCUCUGguggcGCGUgggcCCAGCCUg -3' miRNA: 3'- uGCGUCgGAGGCaa---CGCAa---GGUCGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 21352 | 0.7 | 0.655325 |
Target: 5'- uGCGC-GCCUCCGUccucgucGCcUUCCAGCUUa -3' miRNA: 3'- -UGCGuCGGAGGCAa------CGcAAGGUCGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 147916 | 0.69 | 0.733151 |
Target: 5'- gGCGCgguGGCCUCCGUggucgaagGCGUUgCCA-CCUu -3' miRNA: 3'- -UGCG---UCGGAGGCAa-------CGCAA-GGUcGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 36535 | 0.68 | 0.779394 |
Target: 5'- uCGguGaCCUCuCGgucgGCGUgUCCAGCCUu -3' miRNA: 3'- uGCguC-GGAG-GCaa--CGCA-AGGUCGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 98366 | 0.68 | 0.779394 |
Target: 5'- cCGuCAGCa--CGUUgGCGUUCCGGCCc -3' miRNA: 3'- uGC-GUCGgagGCAA-CGCAAGGUCGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 40535 | 0.68 | 0.788305 |
Target: 5'- gGCGC-GCUgCCGgUGCGUUCCAcgguccuuGCCUg -3' miRNA: 3'- -UGCGuCGGaGGCaACGCAAGGU--------CGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 168224 | 0.68 | 0.797085 |
Target: 5'- cCGC-GCCUCCGUggcaGCcguUUCCAGCUg -3' miRNA: 3'- uGCGuCGGAGGCAa---CGc--AAGGUCGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 30597 | 0.67 | 0.84657 |
Target: 5'- -gGCGGCUUCC--UGCGg-CCGGCCg -3' miRNA: 3'- ugCGUCGGAGGcaACGCaaGGUCGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 62767 | 0.66 | 0.868947 |
Target: 5'- -gGCGGCCgaccccgCCGUUGCGgccgccgcUCaCAGUCUa -3' miRNA: 3'- ugCGUCGGa------GGCAACGCa-------AG-GUCGGA- -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 68133 | 0.66 | 0.876014 |
Target: 5'- gACGCuguuccuGCCUucgCCGUUGCuGUUCCuccgcagaagGGCCg -3' miRNA: 3'- -UGCGu------CGGA---GGCAACG-CAAGG----------UCGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 94879 | 0.66 | 0.880841 |
Target: 5'- gUGCGGCCUCCucgaUGgGUUCCAacagguggcuacgcGCCa -3' miRNA: 3'- uGCGUCGGAGGca--ACgCAAGGU--------------CGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 87036 | 0.66 | 0.889534 |
Target: 5'- -aGCAacGCCUCCGUgcccaUGCGcaccucgUCCAGaCCg -3' miRNA: 3'- ugCGU--CGGAGGCA-----ACGCa------AGGUC-GGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 38014 | 0.66 | 0.894067 |
Target: 5'- cGCGCGGCCUCgGcgGCGggcgCCGacucgcgucccagcGCCa -3' miRNA: 3'- -UGCGUCGGAGgCaaCGCaa--GGU--------------CGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 38397 | 0.66 | 0.895977 |
Target: 5'- -gGCGGCCUCCGUcucCGUgCCGcucGCCg -3' miRNA: 3'- ugCGUCGGAGGCAac-GCAaGGU---CGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 166624 | 0.66 | 0.895977 |
Target: 5'- cACGCcGuCCUCCGagagGCGcgcCCGGCCa -3' miRNA: 3'- -UGCGuC-GGAGGCaa--CGCaa-GGUCGGa -5' |
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2032 | 3' | -58.3 | NC_001347.2 | + | 150261 | 0.66 | 0.895977 |
Target: 5'- cGCGCGGCUggcuaaaauUCCGUUGCGg-CguGUCa -3' miRNA: 3'- -UGCGUCGG---------AGGCAACGCaaGguCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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