miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2034 3' -53.8 NC_001347.2 + 172345 0.66 0.988582
Target:  5'- aGGCGGCACC-GGcgauccaaaaCGACGUGGa--- -3'
miRNA:   3'- gCUGUCGUGGaCCa---------GCUGCACCaaug -5'
2034 3' -53.8 NC_001347.2 + 197544 0.66 0.988582
Target:  5'- gGACcGCAgCgUGGcCGGCGUGGcgGCc -3'
miRNA:   3'- gCUGuCGU-GgACCaGCUGCACCaaUG- -5'
2034 3' -53.8 NC_001347.2 + 153602 0.66 0.988582
Target:  5'- aGAUGGCcaguuucaccuCCUGGaCGugGUGGgggUGCa -3'
miRNA:   3'- gCUGUCGu----------GGACCaGCugCACCa--AUG- -5'
2034 3' -53.8 NC_001347.2 + 95482 0.66 0.983753
Target:  5'- -cGCGGCGCCgGuGUCGGCGgauUGGUUcCg -3'
miRNA:   3'- gcUGUCGUGGaC-CAGCUGC---ACCAAuG- -5'
2034 3' -53.8 NC_001347.2 + 169433 0.66 0.983753
Target:  5'- uGGCAG-ACCuUGGUCGACGU---UGCa -3'
miRNA:   3'- gCUGUCgUGG-ACCAGCUGCAccaAUG- -5'
2034 3' -53.8 NC_001347.2 + 142999 0.66 0.981841
Target:  5'- cCGGCGGCGgCggUGGUgGAgGaGGUUGCg -3'
miRNA:   3'- -GCUGUCGUgG--ACCAgCUgCaCCAAUG- -5'
2034 3' -53.8 NC_001347.2 + 155311 0.66 0.981841
Target:  5'- gGACGGgGCCgggcUGGUCGggggaagaaACGUGGUg-- -3'
miRNA:   3'- gCUGUCgUGG----ACCAGC---------UGCACCAaug -5'
2034 3' -53.8 NC_001347.2 + 149672 0.67 0.979765
Target:  5'- aCGAuCGGCACCugcgggcaggUGGgccCGACGUGGa--- -3'
miRNA:   3'- -GCU-GUCGUGG----------ACCa--GCUGCACCaaug -5'
2034 3' -53.8 NC_001347.2 + 162644 0.67 0.979548
Target:  5'- cCGACAGCAaguCCUGGUUGAacuUGUcuagagcGGUUGg -3'
miRNA:   3'- -GCUGUCGU---GGACCAGCU---GCA-------CCAAUg -5'
2034 3' -53.8 NC_001347.2 + 25433 0.67 0.977517
Target:  5'- -cGCGGCGCCcg--CGACGUGGUUuCa -3'
miRNA:   3'- gcUGUCGUGGaccaGCUGCACCAAuG- -5'
2034 3' -53.8 NC_001347.2 + 165061 0.67 0.969674
Target:  5'- gGAgGGCaACCcgGGUCGACGaUGGggucggGCa -3'
miRNA:   3'- gCUgUCG-UGGa-CCAGCUGC-ACCaa----UG- -5'
2034 3' -53.8 NC_001347.2 + 47492 0.68 0.966672
Target:  5'- -cACGGCcgaCUGGUUGugGUGGUg-- -3'
miRNA:   3'- gcUGUCGug-GACCAGCugCACCAaug -5'
2034 3' -53.8 NC_001347.2 + 146425 0.68 0.960049
Target:  5'- gCGGCAGCACCUGGcUCuauCGUGa---- -3'
miRNA:   3'- -GCUGUCGUGGACC-AGcu-GCACcaaug -5'
2034 3' -53.8 NC_001347.2 + 173095 0.68 0.960049
Target:  5'- uCGGCcguGCACgUGGaucuagauuUCGGCGUGGUgGCc -3'
miRNA:   3'- -GCUGu--CGUGgACC---------AGCUGCACCAaUG- -5'
2034 3' -53.8 NC_001347.2 + 168313 0.69 0.944206
Target:  5'- -cGCGGCGCUcGGUCGACGcguuGUUACu -3'
miRNA:   3'- gcUGUCGUGGaCCAGCUGCac--CAAUG- -5'
2034 3' -53.8 NC_001347.2 + 76425 0.69 0.944206
Target:  5'- --cCAGCGCCUcGGUCuGCGUGGg--- -3'
miRNA:   3'- gcuGUCGUGGA-CCAGcUGCACCaaug -5'
2034 3' -53.8 NC_001347.2 + 16095 0.73 0.757391
Target:  5'- gCGAcCAGCugCUGGaCGACGUGauuuGUUGCc -3'
miRNA:   3'- -GCU-GUCGugGACCaGCUGCAC----CAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.