Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 139302 | 0.66 | 0.969047 |
Target: 5'- -gGCGGAuCGCGUgccuaccgaucuggCGGCGUUGUGCg- -3' miRNA: 3'- agCGCUUcGUGCA--------------GCCGCGACAUGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 172690 | 0.66 | 0.966956 |
Target: 5'- cUCuCGGAGCcgccgACGcUGGCGCUGcgGCUGa -3' miRNA: 3'- -AGcGCUUCG-----UGCaGCCGCGACa-UGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 62970 | 0.66 | 0.966956 |
Target: 5'- gUCGCGAGGU-CGaUCGGCaaaCcGUACUGa -3' miRNA: 3'- -AGCGCUUCGuGC-AGCCGc--GaCAUGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 228601 | 0.66 | 0.963798 |
Target: 5'- -aGCGAGGCcgucGCGUUGGCGCgccaACa- -3' miRNA: 3'- agCGCUUCG----UGCAGCCGCGaca-UGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 228342 | 0.66 | 0.963798 |
Target: 5'- -gGCGAAGCAUGUgGGUGgUGcgaUGCg- -3' miRNA: 3'- agCGCUUCGUGCAgCCGCgAC---AUGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 153236 | 0.66 | 0.953079 |
Target: 5'- gCGCGGGcGCGCGUCGGCcgGCgacgGCg- -3' miRNA: 3'- aGCGCUU-CGUGCAGCCG--CGaca-UGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 81496 | 0.67 | 0.944852 |
Target: 5'- -gGCGGGugcGCAcCGcCGGUGCUGcUGCUGa -3' miRNA: 3'- agCGCUU---CGU-GCaGCCGCGAC-AUGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 1904 | 0.67 | 0.944852 |
Target: 5'- cUGCGGcuGGCugGcgcUgGGCGCgGUGCUGc -3' miRNA: 3'- aGCGCU--UCGugC---AgCCGCGaCAUGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 78400 | 0.67 | 0.940405 |
Target: 5'- cCGCGGGcCACGUCGG-GCUGcUGCc- -3' miRNA: 3'- aGCGCUUcGUGCAGCCgCGAC-AUGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 208053 | 0.67 | 0.935733 |
Target: 5'- gUCGCGgcGUuCGUUGGCGCc--GCUGc -3' miRNA: 3'- -AGCGCuuCGuGCAGCCGCGacaUGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 1154 | 0.67 | 0.935733 |
Target: 5'- -gGUGGAGCGCca-GGCGCUGacggaGCUGg -3' miRNA: 3'- agCGCUUCGUGcagCCGCGACa----UGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 184418 | 0.67 | 0.935733 |
Target: 5'- cUCGUGAAGCgGCGcCGGguCGCUGUGa-- -3' miRNA: 3'- -AGCGCUUCG-UGCaGCC--GCGACAUgac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 21709 | 0.67 | 0.92571 |
Target: 5'- gUUGCGAuccuGGCGCGUcucucCGGCGgCUGUgGCUa -3' miRNA: 3'- -AGCGCU----UCGUGCA-----GCCGC-GACA-UGAc -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 103611 | 0.68 | 0.920357 |
Target: 5'- uUCGUGGgcgAGCACGUCaaGGUGCUcgaaGUGCg- -3' miRNA: 3'- -AGCGCU---UCGUGCAG--CCGCGA----CAUGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 2352 | 0.68 | 0.914777 |
Target: 5'- gCGCGGgcgugcugGGCGCGcUGGCGCUGggACg- -3' miRNA: 3'- aGCGCU--------UCGUGCaGCCGCGACa-UGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 87472 | 0.68 | 0.908972 |
Target: 5'- aCGUGcaaaAGGCACGUCGGUaGCUGUcgauGCa- -3' miRNA: 3'- aGCGC----UUCGUGCAGCCG-CGACA----UGac -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 28245 | 0.68 | 0.908379 |
Target: 5'- aCGCGuacuGGCuggaACGUCGGCGCcgacccgggacccUGaUGCUGg -3' miRNA: 3'- aGCGCu---UCG----UGCAGCCGCG-------------AC-AUGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 63839 | 0.68 | 0.896691 |
Target: 5'- -gGCGggGCugGUugcuuuuccCGGCcCUGUGCUu -3' miRNA: 3'- agCGCuuCGugCA---------GCCGcGACAUGAc -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 30966 | 0.69 | 0.889562 |
Target: 5'- -aGCGGAGCGCGacccauuucaaggUCGGCGCaccccaGCUGg -3' miRNA: 3'- agCGCUUCGUGC-------------AGCCGCGaca---UGAC- -5' |
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2034 | 5' | -55.6 | NC_001347.2 | + | 29946 | 0.69 | 0.883534 |
Target: 5'- cCGCGAcAGCuACcgaGGCGCUGUACa- -3' miRNA: 3'- aGCGCU-UCG-UGcagCCGCGACAUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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