Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 124884 | 0.78 | 0.408243 |
Target: 5'- cUCcCGAGGCACGUCGGgGCUGUGu-- -3' miRNA: 3'- -AGcGCUUCGUGCAGCCgCGACAUgac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 214 | 0.73 | 0.654278 |
Target: 5'- -gGCGggGUGUGUCGGCGgUGUGCg- -3' miRNA: 3'- agCGCuuCGUGCAGCCGCgACAUGac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 79051 | 0.73 | 0.654278 |
Target: 5'- cCGCGAgaaGGCGCGUCGGCGCc------ -3' miRNA: 3'- aGCGCU---UCGUGCAGCCGCGacaugac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 229693 | 0.73 | 0.654278 |
Target: 5'- -gGCGggGUGUGUCGGCGgUGUGCg- -3' miRNA: 3'- agCGCuuCGUGCAGCCGCgACAUGac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 107078 | 0.71 | 0.797183 |
Target: 5'- aCGCuGAcgguGCGCGUaCGacacGCGCUGUGCUGg -3' miRNA: 3'- aGCG-CUu---CGUGCA-GC----CGCGACAUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 163522 | 0.7 | 0.814444 |
Target: 5'- gCGCGAGuuGCGCGUUcuguaGGCGCUGcUGCa- -3' miRNA: 3'- aGCGCUU--CGUGCAG-----CCGCGAC-AUGac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 160806 | 0.7 | 0.822842 |
Target: 5'- cCGCGggGUGCGUgUGGCuCUGaUGCUGc -3' miRNA: 3'- aGCGCuuCGUGCA-GCCGcGAC-AUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 106022 | 0.7 | 0.839137 |
Target: 5'- aUCGCGcGGC-UGUCGGCGCUuuucGUcauGCUGc -3' miRNA: 3'- -AGCGCuUCGuGCAGCCGCGA----CA---UGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 138691 | 0.7 | 0.84702 |
Target: 5'- uUCGCGGgcgGGUGCGUCGGCuaGCgGU-CUGg -3' miRNA: 3'- -AGCGCU---UCGUGCAGCCG--CGaCAuGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 174796 | 0.7 | 0.84702 |
Target: 5'- gUCGCGAGuuCAUGUUGGCGCgcgaccUGCUGg -3' miRNA: 3'- -AGCGCUUc-GUGCAGCCGCGac----AUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 194465 | 0.7 | 0.84702 |
Target: 5'- gCGCGccacGGCGgguCGUUGGCucccGCUGUGCUGg -3' miRNA: 3'- aGCGCu---UCGU---GCAGCCG----CGACAUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 86268 | 0.69 | 0.876636 |
Target: 5'- gCGCGAAGCuuCGgCGGCGUgccGCUGa -3' miRNA: 3'- aGCGCUUCGu-GCaGCCGCGacaUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 207112 | 0.69 | 0.876636 |
Target: 5'- gUCGCGGacAGUuccuCGUCGGCGCU-UACg- -3' miRNA: 3'- -AGCGCU--UCGu---GCAGCCGCGAcAUGac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 96295 | 0.69 | 0.879421 |
Target: 5'- aUCGCcGAGUGCG-CGGCGCacaugaucaucucgGUGCUGa -3' miRNA: 3'- -AGCGcUUCGUGCaGCCGCGa-------------CAUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 29946 | 0.69 | 0.883534 |
Target: 5'- cCGCGAcAGCuACcgaGGCGCUGUACa- -3' miRNA: 3'- aGCGCU-UCG-UGcagCCGCGACAUGac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 30966 | 0.69 | 0.889562 |
Target: 5'- -aGCGGAGCGCGacccauuucaaggUCGGCGCaccccaGCUGg -3' miRNA: 3'- agCGCUUCGUGC-------------AGCCGCGaca---UGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 63839 | 0.68 | 0.896691 |
Target: 5'- -gGCGggGCugGUugcuuuuccCGGCcCUGUGCUu -3' miRNA: 3'- agCGCuuCGugCA---------GCCGcGACAUGAc -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 28245 | 0.68 | 0.908379 |
Target: 5'- aCGCGuacuGGCuggaACGUCGGCGCcgacccgggacccUGaUGCUGg -3' miRNA: 3'- aGCGCu---UCG----UGCAGCCGCG-------------AC-AUGAC- -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 87472 | 0.68 | 0.908972 |
Target: 5'- aCGUGcaaaAGGCACGUCGGUaGCUGUcgauGCa- -3' miRNA: 3'- aGCGC----UUCGUGCAGCCG-CGACA----UGac -5' |
|||||||
2034 | 5' | -55.6 | NC_001347.2 | + | 2352 | 0.68 | 0.914777 |
Target: 5'- gCGCGGgcgugcugGGCGCGcUGGCGCUGggACg- -3' miRNA: 3'- aGCGCU--------UCGUGCaGCCGCGACa-UGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home