miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2034 5' -55.6 NC_001347.2 + 96295 0.69 0.879421
Target:  5'- aUCGCcGAGUGCG-CGGCGCacaugaucaucucgGUGCUGa -3'
miRNA:   3'- -AGCGcUUCGUGCaGCCGCGa-------------CAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 207112 0.69 0.876636
Target:  5'- gUCGCGGacAGUuccuCGUCGGCGCU-UACg- -3'
miRNA:   3'- -AGCGCU--UCGu---GCAGCCGCGAcAUGac -5'
2034 5' -55.6 NC_001347.2 + 86268 0.69 0.876636
Target:  5'- gCGCGAAGCuuCGgCGGCGUgccGCUGa -3'
miRNA:   3'- aGCGCUUCGu-GCaGCCGCGacaUGAC- -5'
2034 5' -55.6 NC_001347.2 + 174796 0.7 0.84702
Target:  5'- gUCGCGAGuuCAUGUUGGCGCgcgaccUGCUGg -3'
miRNA:   3'- -AGCGCUUc-GUGCAGCCGCGac----AUGAC- -5'
2034 5' -55.6 NC_001347.2 + 138691 0.7 0.84702
Target:  5'- uUCGCGGgcgGGUGCGUCGGCuaGCgGU-CUGg -3'
miRNA:   3'- -AGCGCU---UCGUGCAGCCG--CGaCAuGAC- -5'
2034 5' -55.6 NC_001347.2 + 194465 0.7 0.84702
Target:  5'- gCGCGccacGGCGgguCGUUGGCucccGCUGUGCUGg -3'
miRNA:   3'- aGCGCu---UCGU---GCAGCCG----CGACAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 106022 0.7 0.839137
Target:  5'- aUCGCGcGGC-UGUCGGCGCUuuucGUcauGCUGc -3'
miRNA:   3'- -AGCGCuUCGuGCAGCCGCGA----CA---UGAC- -5'
2034 5' -55.6 NC_001347.2 + 160806 0.7 0.822842
Target:  5'- cCGCGggGUGCGUgUGGCuCUGaUGCUGc -3'
miRNA:   3'- aGCGCuuCGUGCA-GCCGcGAC-AUGAC- -5'
2034 5' -55.6 NC_001347.2 + 163522 0.7 0.814444
Target:  5'- gCGCGAGuuGCGCGUUcuguaGGCGCUGcUGCa- -3'
miRNA:   3'- aGCGCUU--CGUGCAG-----CCGCGAC-AUGac -5'
2034 5' -55.6 NC_001347.2 + 107078 0.71 0.797183
Target:  5'- aCGCuGAcgguGCGCGUaCGacacGCGCUGUGCUGg -3'
miRNA:   3'- aGCG-CUu---CGUGCA-GC----CGCGACAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 229693 0.73 0.654278
Target:  5'- -gGCGggGUGUGUCGGCGgUGUGCg- -3'
miRNA:   3'- agCGCuuCGUGCAGCCGCgACAUGac -5'
2034 5' -55.6 NC_001347.2 + 214 0.73 0.654278
Target:  5'- -gGCGggGUGUGUCGGCGgUGUGCg- -3'
miRNA:   3'- agCGCuuCGUGCAGCCGCgACAUGac -5'
2034 5' -55.6 NC_001347.2 + 79051 0.73 0.654278
Target:  5'- cCGCGAgaaGGCGCGUCGGCGCc------ -3'
miRNA:   3'- aGCGCU---UCGUGCAGCCGCGacaugac -5'
2034 5' -55.6 NC_001347.2 + 124884 0.78 0.408243
Target:  5'- cUCcCGAGGCACGUCGGgGCUGUGu-- -3'
miRNA:   3'- -AGcGCUUCGUGCAGCCgCGACAUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.