miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2034 5' -55.6 NC_001347.2 + 214 0.73 0.654278
Target:  5'- -gGCGggGUGUGUCGGCGgUGUGCg- -3'
miRNA:   3'- agCGCuuCGUGCAGCCGCgACAUGac -5'
2034 5' -55.6 NC_001347.2 + 1154 0.67 0.935733
Target:  5'- -gGUGGAGCGCca-GGCGCUGacggaGCUGg -3'
miRNA:   3'- agCGCUUCGUGcagCCGCGACa----UGAC- -5'
2034 5' -55.6 NC_001347.2 + 1904 0.67 0.944852
Target:  5'- cUGCGGcuGGCugGcgcUgGGCGCgGUGCUGc -3'
miRNA:   3'- aGCGCU--UCGugC---AgCCGCGaCAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 2352 0.68 0.914777
Target:  5'- gCGCGGgcgugcugGGCGCGcUGGCGCUGggACg- -3'
miRNA:   3'- aGCGCU--------UCGUGCaGCCGCGACa-UGac -5'
2034 5' -55.6 NC_001347.2 + 21709 0.67 0.92571
Target:  5'- gUUGCGAuccuGGCGCGUcucucCGGCGgCUGUgGCUa -3'
miRNA:   3'- -AGCGCU----UCGUGCA-----GCCGC-GACA-UGAc -5'
2034 5' -55.6 NC_001347.2 + 28245 0.68 0.908379
Target:  5'- aCGCGuacuGGCuggaACGUCGGCGCcgacccgggacccUGaUGCUGg -3'
miRNA:   3'- aGCGCu---UCG----UGCAGCCGCG-------------AC-AUGAC- -5'
2034 5' -55.6 NC_001347.2 + 29946 0.69 0.883534
Target:  5'- cCGCGAcAGCuACcgaGGCGCUGUACa- -3'
miRNA:   3'- aGCGCU-UCG-UGcagCCGCGACAUGac -5'
2034 5' -55.6 NC_001347.2 + 30966 0.69 0.889562
Target:  5'- -aGCGGAGCGCGacccauuucaaggUCGGCGCaccccaGCUGg -3'
miRNA:   3'- agCGCUUCGUGC-------------AGCCGCGaca---UGAC- -5'
2034 5' -55.6 NC_001347.2 + 62970 0.66 0.966956
Target:  5'- gUCGCGAGGU-CGaUCGGCaaaCcGUACUGa -3'
miRNA:   3'- -AGCGCUUCGuGC-AGCCGc--GaCAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 63839 0.68 0.896691
Target:  5'- -gGCGggGCugGUugcuuuuccCGGCcCUGUGCUu -3'
miRNA:   3'- agCGCuuCGugCA---------GCCGcGACAUGAc -5'
2034 5' -55.6 NC_001347.2 + 78400 0.67 0.940405
Target:  5'- cCGCGGGcCACGUCGG-GCUGcUGCc- -3'
miRNA:   3'- aGCGCUUcGUGCAGCCgCGAC-AUGac -5'
2034 5' -55.6 NC_001347.2 + 79051 0.73 0.654278
Target:  5'- cCGCGAgaaGGCGCGUCGGCGCc------ -3'
miRNA:   3'- aGCGCU---UCGUGCAGCCGCGacaugac -5'
2034 5' -55.6 NC_001347.2 + 81496 0.67 0.944852
Target:  5'- -gGCGGGugcGCAcCGcCGGUGCUGcUGCUGa -3'
miRNA:   3'- agCGCUU---CGU-GCaGCCGCGAC-AUGAC- -5'
2034 5' -55.6 NC_001347.2 + 86268 0.69 0.876636
Target:  5'- gCGCGAAGCuuCGgCGGCGUgccGCUGa -3'
miRNA:   3'- aGCGCUUCGu-GCaGCCGCGacaUGAC- -5'
2034 5' -55.6 NC_001347.2 + 87472 0.68 0.908972
Target:  5'- aCGUGcaaaAGGCACGUCGGUaGCUGUcgauGCa- -3'
miRNA:   3'- aGCGC----UUCGUGCAGCCG-CGACA----UGac -5'
2034 5' -55.6 NC_001347.2 + 96295 0.69 0.879421
Target:  5'- aUCGCcGAGUGCG-CGGCGCacaugaucaucucgGUGCUGa -3'
miRNA:   3'- -AGCGcUUCGUGCaGCCGCGa-------------CAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 103611 0.68 0.920357
Target:  5'- uUCGUGGgcgAGCACGUCaaGGUGCUcgaaGUGCg- -3'
miRNA:   3'- -AGCGCU---UCGUGCAG--CCGCGA----CAUGac -5'
2034 5' -55.6 NC_001347.2 + 106022 0.7 0.839137
Target:  5'- aUCGCGcGGC-UGUCGGCGCUuuucGUcauGCUGc -3'
miRNA:   3'- -AGCGCuUCGuGCAGCCGCGA----CA---UGAC- -5'
2034 5' -55.6 NC_001347.2 + 107078 0.71 0.797183
Target:  5'- aCGCuGAcgguGCGCGUaCGacacGCGCUGUGCUGg -3'
miRNA:   3'- aGCG-CUu---CGUGCA-GC----CGCGACAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 124884 0.78 0.408243
Target:  5'- cUCcCGAGGCACGUCGGgGCUGUGu-- -3'
miRNA:   3'- -AGcGCUUCGUGCAGCCgCGACAUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.