miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2034 5' -55.6 NC_001347.2 + 138691 0.7 0.84702
Target:  5'- uUCGCGGgcgGGUGCGUCGGCuaGCgGU-CUGg -3'
miRNA:   3'- -AGCGCU---UCGUGCAGCCG--CGaCAuGAC- -5'
2034 5' -55.6 NC_001347.2 + 139302 0.66 0.969047
Target:  5'- -gGCGGAuCGCGUgccuaccgaucuggCGGCGUUGUGCg- -3'
miRNA:   3'- agCGCUUcGUGCA--------------GCCGCGACAUGac -5'
2034 5' -55.6 NC_001347.2 + 153236 0.66 0.953079
Target:  5'- gCGCGGGcGCGCGUCGGCcgGCgacgGCg- -3'
miRNA:   3'- aGCGCUU-CGUGCAGCCG--CGaca-UGac -5'
2034 5' -55.6 NC_001347.2 + 160806 0.7 0.822842
Target:  5'- cCGCGggGUGCGUgUGGCuCUGaUGCUGc -3'
miRNA:   3'- aGCGCuuCGUGCA-GCCGcGAC-AUGAC- -5'
2034 5' -55.6 NC_001347.2 + 163522 0.7 0.814444
Target:  5'- gCGCGAGuuGCGCGUUcuguaGGCGCUGcUGCa- -3'
miRNA:   3'- aGCGCUU--CGUGCAG-----CCGCGAC-AUGac -5'
2034 5' -55.6 NC_001347.2 + 172690 0.66 0.966956
Target:  5'- cUCuCGGAGCcgccgACGcUGGCGCUGcgGCUGa -3'
miRNA:   3'- -AGcGCUUCG-----UGCaGCCGCGACa-UGAC- -5'
2034 5' -55.6 NC_001347.2 + 174796 0.7 0.84702
Target:  5'- gUCGCGAGuuCAUGUUGGCGCgcgaccUGCUGg -3'
miRNA:   3'- -AGCGCUUc-GUGCAGCCGCGac----AUGAC- -5'
2034 5' -55.6 NC_001347.2 + 184418 0.67 0.935733
Target:  5'- cUCGUGAAGCgGCGcCGGguCGCUGUGa-- -3'
miRNA:   3'- -AGCGCUUCG-UGCaGCC--GCGACAUgac -5'
2034 5' -55.6 NC_001347.2 + 194465 0.7 0.84702
Target:  5'- gCGCGccacGGCGgguCGUUGGCucccGCUGUGCUGg -3'
miRNA:   3'- aGCGCu---UCGU---GCAGCCG----CGACAUGAC- -5'
2034 5' -55.6 NC_001347.2 + 207112 0.69 0.876636
Target:  5'- gUCGCGGacAGUuccuCGUCGGCGCU-UACg- -3'
miRNA:   3'- -AGCGCU--UCGu---GCAGCCGCGAcAUGac -5'
2034 5' -55.6 NC_001347.2 + 208053 0.67 0.935733
Target:  5'- gUCGCGgcGUuCGUUGGCGCc--GCUGc -3'
miRNA:   3'- -AGCGCuuCGuGCAGCCGCGacaUGAC- -5'
2034 5' -55.6 NC_001347.2 + 228342 0.66 0.963798
Target:  5'- -gGCGAAGCAUGUgGGUGgUGcgaUGCg- -3'
miRNA:   3'- agCGCUUCGUGCAgCCGCgAC---AUGac -5'
2034 5' -55.6 NC_001347.2 + 228601 0.66 0.963798
Target:  5'- -aGCGAGGCcgucGCGUUGGCGCgccaACa- -3'
miRNA:   3'- agCGCUUCG----UGCAGCCGCGaca-UGac -5'
2034 5' -55.6 NC_001347.2 + 229693 0.73 0.654278
Target:  5'- -gGCGggGUGUGUCGGCGgUGUGCg- -3'
miRNA:   3'- agCGCuuCGUGCAGCCGCgACAUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.