miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20344 3' -59.3 NC_004687.1 + 146637 0.66 0.793627
Target:  5'- gUCGGGcuGGCGCGGgccguCGCAgauggUGCGGUa -3'
miRNA:   3'- uGGCUCuuCCGCGUC-----GCGUa----GCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 154653 0.66 0.793627
Target:  5'- gACCuGGu-GGCGCuGCGCuacgcugcgagcGUCuGCGGCa -3'
miRNA:   3'- -UGGcUCuuCCGCGuCGCG------------UAG-CGCCG- -5'
20344 3' -59.3 NC_004687.1 + 144662 0.66 0.793627
Target:  5'- cGCCGGGcAGG-GCAGC-UAUCcCGGCc -3'
miRNA:   3'- -UGGCUCuUCCgCGUCGcGUAGcGCCG- -5'
20344 3' -59.3 NC_004687.1 + 89411 0.66 0.793627
Target:  5'- uGCgCGGcucGGCGCGGUGCGaccUCGaCGGCc -3'
miRNA:   3'- -UG-GCUcuuCCGCGUCGCGU---AGC-GCCG- -5'
20344 3' -59.3 NC_004687.1 + 27154 0.66 0.793627
Target:  5'- cGCCGAc-GGGC-CGGUGCG-CGUGGUg -3'
miRNA:   3'- -UGGCUcuUCCGcGUCGCGUaGCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 1248 0.66 0.793627
Target:  5'- gUCGAGcuGGcCGCAGaCGC-UCGCaGCg -3'
miRNA:   3'- uGGCUCuuCC-GCGUC-GCGuAGCGcCG- -5'
20344 3' -59.3 NC_004687.1 + 81834 0.66 0.793627
Target:  5'- gUCGGuccGGAGGCGCuGCcgaGUCGCGGg -3'
miRNA:   3'- uGGCU---CUUCCGCGuCGcg-UAGCGCCg -5'
20344 3' -59.3 NC_004687.1 + 50452 0.66 0.793627
Target:  5'- uGCgCGuAGGccGCGCGcCGgAUCGCGGCg -3'
miRNA:   3'- -UG-GC-UCUucCGCGUcGCgUAGCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 67973 0.66 0.793627
Target:  5'- -aCGGGGugaacaGGGCGCucagcGGCGCGUCGaaGGUg -3'
miRNA:   3'- ugGCUCU------UCCGCG-----UCGCGUAGCg-CCG- -5'
20344 3' -59.3 NC_004687.1 + 52564 0.66 0.793627
Target:  5'- uGCCgGAGGcgaucAGGUggGCGGCGaCGUCGagGGCg -3'
miRNA:   3'- -UGG-CUCU-----UCCG--CGUCGC-GUAGCg-CCG- -5'
20344 3' -59.3 NC_004687.1 + 35017 0.66 0.788283
Target:  5'- uGCCGAccagggugacgcagcGgcGGCaGCAGCcccggcagccGCAggCGCGGCg -3'
miRNA:   3'- -UGGCU---------------CuuCCG-CGUCG----------CGUa-GCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 15091 0.66 0.784694
Target:  5'- -aCGAGAAGGCcgucuaCGGCGa--CGCGGUc -3'
miRNA:   3'- ugGCUCUUCCGc-----GUCGCguaGCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 115400 0.66 0.784694
Target:  5'- cCCGAGGAGauggccGCGCGG-GCcaaggagUGCGGCg -3'
miRNA:   3'- uGGCUCUUC------CGCGUCgCGua-----GCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 13859 0.66 0.784694
Target:  5'- cGCCGAGu-GGCGCaAGCcGCA---CGGCu -3'
miRNA:   3'- -UGGCUCuuCCGCG-UCG-CGUagcGCCG- -5'
20344 3' -59.3 NC_004687.1 + 50384 0.66 0.784694
Target:  5'- cACCGccGGAcGCGCAGUG-GUgGCGGCa -3'
miRNA:   3'- -UGGCu-CUUcCGCGUCGCgUAgCGCCG- -5'
20344 3' -59.3 NC_004687.1 + 64001 0.66 0.784694
Target:  5'- cUCGGuGAGGGCGCAGgccagGCcgCGCcgGGCa -3'
miRNA:   3'- uGGCU-CUUCCGCGUCg----CGuaGCG--CCG- -5'
20344 3' -59.3 NC_004687.1 + 47805 0.66 0.784694
Target:  5'- cGCCGGu--GGCGCAG-GCGagCGgGGCu -3'
miRNA:   3'- -UGGCUcuuCCGCGUCgCGUa-GCgCCG- -5'
20344 3' -59.3 NC_004687.1 + 72419 0.66 0.784694
Target:  5'- cCCGAGGugaAGGUGUAGU-CGUCGUagGGCc -3'
miRNA:   3'- uGGCUCU---UCCGCGUCGcGUAGCG--CCG- -5'
20344 3' -59.3 NC_004687.1 + 66678 0.66 0.783793
Target:  5'- gGCCGGGGcucgauccuGGUcgGCGGCgGCAUCuauuccgGCGGCg -3'
miRNA:   3'- -UGGCUCUu--------CCG--CGUCG-CGUAG-------CGCCG- -5'
20344 3' -59.3 NC_004687.1 + 153109 0.66 0.781083
Target:  5'- gUCGGGcgcguaguagacaAAGGCGUagccgucgccgccgGGCGCggUGCGGCa -3'
miRNA:   3'- uGGCUC-------------UUCCGCG--------------UCGCGuaGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.