miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20350 5' -59.7 NC_004687.1 + 1068 0.65 0.784367
Target:  5'- gCUGCGcCUGGcCAUCCaGGGCGccgagcugaugaaGCAUCg -3'
miRNA:   3'- -GGCGC-GACCuGUGGGaCUCGC-------------CGUAG- -5'
20350 5' -59.7 NC_004687.1 + 46053 0.65 0.78347
Target:  5'- cCCGCGCcuguugcaggucGGGCACCaCUcGGUGGCGg- -3'
miRNA:   3'- -GGCGCGa-----------CCUGUGG-GAcUCGCCGUag -5'
20350 5' -59.7 NC_004687.1 + 105208 0.66 0.776245
Target:  5'- cCCGCGCUGGAgaccucggucaCGCCCagacgagGAGCGuGgAa- -3'
miRNA:   3'- -GGCGCGACCU-----------GUGGGa------CUCGC-CgUag -5'
20350 5' -59.7 NC_004687.1 + 9320 0.66 0.776245
Target:  5'- gCUGCGCUGG-CGCCgC-GAGUGGaCAc- -3'
miRNA:   3'- -GGCGCGACCuGUGG-GaCUCGCC-GUag -5'
20350 5' -59.7 NC_004687.1 + 67211 0.66 0.776245
Target:  5'- -aGgGCUGGACccccgaccaccGCCC-GAcCGGCGUCg -3'
miRNA:   3'- ggCgCGACCUG-----------UGGGaCUcGCCGUAG- -5'
20350 5' -59.7 NC_004687.1 + 66243 0.66 0.776245
Target:  5'- gCCGCGCcgucGGGCACCgUcGAGgCGcCGUCg -3'
miRNA:   3'- -GGCGCGa---CCUGUGGgA-CUC-GCcGUAG- -5'
20350 5' -59.7 NC_004687.1 + 19620 0.66 0.767104
Target:  5'- gCGgGcCUGGACGUCCUGGGCcggaaGGuCGUCa -3'
miRNA:   3'- gGCgC-GACCUGUGGGACUCG-----CC-GUAG- -5'
20350 5' -59.7 NC_004687.1 + 5254 0.66 0.767104
Target:  5'- -aGCgGCUGGAgACCCUGcaGGCcGCAcgUCa -3'
miRNA:   3'- ggCG-CGACCUgUGGGAC--UCGcCGU--AG- -5'
20350 5' -59.7 NC_004687.1 + 112794 0.66 0.767104
Target:  5'- aCCG-GCUccGGCGCCCaUGAGCGGgAUg -3'
miRNA:   3'- -GGCgCGAc-CUGUGGG-ACUCGCCgUAg -5'
20350 5' -59.7 NC_004687.1 + 3786 0.66 0.767104
Target:  5'- gCCGCGCUGG---CCCUGAuGCuGC-UCu -3'
miRNA:   3'- -GGCGCGACCuguGGGACU-CGcCGuAG- -5'
20350 5' -59.7 NC_004687.1 + 37776 0.66 0.766184
Target:  5'- uCCGCcagccGCUGGGCACgCUG-GCcgacaagGGCAUUc -3'
miRNA:   3'- -GGCG-----CGACCUGUGgGACuCG-------CCGUAG- -5'
20350 5' -59.7 NC_004687.1 + 109878 0.66 0.761564
Target:  5'- gCUGCGCUGGAaggccgcgacgauguCGCCCUcGGUauuGGCcgCg -3'
miRNA:   3'- -GGCGCGACCU---------------GUGGGAcUCG---CCGuaG- -5'
20350 5' -59.7 NC_004687.1 + 101557 0.66 0.757849
Target:  5'- cCUGCGCggccugGGACuCCC-GGGCGGUc-- -3'
miRNA:   3'- -GGCGCGa-----CCUGuGGGaCUCGCCGuag -5'
20350 5' -59.7 NC_004687.1 + 73416 0.66 0.757849
Target:  5'- gCCGCGCUGGACgaACCCgaUGAagaGGgAUg -3'
miRNA:   3'- -GGCGCGACCUG--UGGG--ACUcg-CCgUAg -5'
20350 5' -59.7 NC_004687.1 + 40844 0.66 0.757849
Target:  5'- gCCGcCGCUGGugGCCggugccggggUGGGCGGUc-- -3'
miRNA:   3'- -GGC-GCGACCugUGGg---------ACUCGCCGuag -5'
20350 5' -59.7 NC_004687.1 + 127460 0.66 0.756918
Target:  5'- uUGCGUUGGGCacgACCUUGucggcggacaccaGGCGGCGa- -3'
miRNA:   3'- gGCGCGACCUG---UGGGAC-------------UCGCCGUag -5'
20350 5' -59.7 NC_004687.1 + 148658 0.66 0.756918
Target:  5'- gCCuCGCUGGACcgcugguacgccaGCCUcagcaagaUGAGUGGCgAUCg -3'
miRNA:   3'- -GGcGCGACCUG-------------UGGG--------ACUCGCCG-UAG- -5'
20350 5' -59.7 NC_004687.1 + 44860 0.66 0.748489
Target:  5'- gCCGgGCcGGAUGCCCcGGGUGuGCucGUCg -3'
miRNA:   3'- -GGCgCGaCCUGUGGGaCUCGC-CG--UAG- -5'
20350 5' -59.7 NC_004687.1 + 97876 0.66 0.748489
Target:  5'- aCCGUGCUGGGCAUCUUcGucguucucGGC-GCGUCc -3'
miRNA:   3'- -GGCGCGACCUGUGGGA-C--------UCGcCGUAG- -5'
20350 5' -59.7 NC_004687.1 + 145366 0.66 0.739032
Target:  5'- gCCGCGCUGGGCggcaugGCCgCUGuguuGCuGGCc-- -3'
miRNA:   3'- -GGCGCGACCUG------UGG-GACu---CG-CCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.