miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20354 3' -57.6 NC_004687.1 + 78906 0.66 0.875117
Target:  5'- cCCUGGUaggCCGGgAUCugCGGCCc- -3'
miRNA:   3'- aGGGCUAca-GGCUgUAGugGCCGGac -5'
20354 3' -57.6 NC_004687.1 + 78001 0.66 0.875117
Target:  5'- -gCCGAg--CUGACGU--CCGGCCUGg -3'
miRNA:   3'- agGGCUacaGGCUGUAguGGCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 83546 0.66 0.875117
Target:  5'- aCCCgGGUGUCCGACGgccagauggUCGUCGGCg-- -3'
miRNA:   3'- aGGG-CUACAGGCUGU---------AGUGGCCGgac -5'
20354 3' -57.6 NC_004687.1 + 115049 0.66 0.875117
Target:  5'- gUCCCGAUGaggcucaggCCGGaccgcccacccCggCACCGGCCa- -3'
miRNA:   3'- -AGGGCUACa--------GGCU-----------GuaGUGGCCGGac -5'
20354 3' -57.6 NC_004687.1 + 133243 0.66 0.874406
Target:  5'- aCCCGGUGUUCGAgGUCcucgcggACCGagaacGCCUu -3'
miRNA:   3'- aGGGCUACAGGCUgUAG-------UGGC-----CGGAc -5'
20354 3' -57.6 NC_004687.1 + 67764 0.66 0.867917
Target:  5'- gCCUGGcUGUCCGACGgcaacCACCGGgUCa- -3'
miRNA:   3'- aGGGCU-ACAGGCUGUa----GUGGCC-GGac -5'
20354 3' -57.6 NC_004687.1 + 68897 0.66 0.867917
Target:  5'- aUCCUGcgGUCCGG---UAUCGGCCa- -3'
miRNA:   3'- -AGGGCuaCAGGCUguaGUGGCCGGac -5'
20354 3' -57.6 NC_004687.1 + 108564 0.66 0.867917
Target:  5'- cCCCGuccaggCGACAUCgauAUCGGCCUGa -3'
miRNA:   3'- aGGGCuacag-GCUGUAG---UGGCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 110674 0.66 0.867917
Target:  5'- -gCCGAgcUGcCCGACggCGCCG-CCUGg -3'
miRNA:   3'- agGGCU--ACaGGCUGuaGUGGCcGGAC- -5'
20354 3' -57.6 NC_004687.1 + 40857 0.66 0.867917
Target:  5'- -gCCGGUG-CCGGgGUgGgcgguCCGGCCUGa -3'
miRNA:   3'- agGGCUACaGGCUgUAgU-----GGCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 48646 0.66 0.860512
Target:  5'- gUCCCGGUcGUCgagccgguCGGCGUCGgCGGUCa- -3'
miRNA:   3'- -AGGGCUA-CAG--------GCUGUAGUgGCCGGac -5'
20354 3' -57.6 NC_004687.1 + 8162 0.66 0.860512
Target:  5'- gUCCCGAUucagCgCGACugcccgCGCgCGGCCUGu -3'
miRNA:   3'- -AGGGCUAca--G-GCUGua----GUG-GCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 132374 0.66 0.860512
Target:  5'- aUCCgCGA-GUCCGACAUCAaggUGGUCc- -3'
miRNA:   3'- -AGG-GCUaCAGGCUGUAGUg--GCCGGac -5'
20354 3' -57.6 NC_004687.1 + 26747 0.66 0.859761
Target:  5'- --aCGGUGUCCGAauccccacauggcCA-CACCGGCgUGg -3'
miRNA:   3'- aggGCUACAGGCU-------------GUaGUGGCCGgAC- -5'
20354 3' -57.6 NC_004687.1 + 50721 0.66 0.852909
Target:  5'- -aCCGAgGUCUccagcGCGggCACCGGCCUGu -3'
miRNA:   3'- agGGCUaCAGGc----UGUa-GUGGCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 76956 0.66 0.852909
Target:  5'- aCCUcuuuaaCGACGUCGCCGGUCUGc -3'
miRNA:   3'- aGGGcuacagGCUGUAGUGGCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 42046 0.66 0.845901
Target:  5'- aUCUGAcgGUCaccuacuucgggcagGACGUCACCGGCCa- -3'
miRNA:   3'- aGGGCUa-CAGg--------------CUGUAGUGGCCGGac -5'
20354 3' -57.6 NC_004687.1 + 89686 0.66 0.845112
Target:  5'- --aCGGUGcCCGACggCG-CGGCCUGg -3'
miRNA:   3'- aggGCUACaGGCUGuaGUgGCCGGAC- -5'
20354 3' -57.6 NC_004687.1 + 142346 0.66 0.845112
Target:  5'- gCCCGAUG-CCGACuUC-UCGGUCa- -3'
miRNA:   3'- aGGGCUACaGGCUGuAGuGGCCGGac -5'
20354 3' -57.6 NC_004687.1 + 148805 0.66 0.845112
Target:  5'- aCCCGAUGUCgCGcuACuUCGCCgaccaGGCCg- -3'
miRNA:   3'- aGGGCUACAG-GC--UGuAGUGG-----CCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.