miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20361 3' -55.6 NC_004687.1 + 59274 0.66 0.937098
Target:  5'- aCCGCCACaccggCgagGGcCAGCGGAUUc-- -3'
miRNA:   3'- -GGCGGUGaua--Ga--CC-GUCGCCUAGcac -5'
20361 3' -55.6 NC_004687.1 + 20826 0.66 0.92697
Target:  5'- aUGCCgACggcaagagcgAUCUGGCcaAGCuGAUCGUGg -3'
miRNA:   3'- gGCGG-UGa---------UAGACCG--UCGcCUAGCAC- -5'
20361 3' -55.6 NC_004687.1 + 51482 0.66 0.921549
Target:  5'- -gGCCAgcaUGUC-GGCGGCGacguuGAUCGUGa -3'
miRNA:   3'- ggCGGUg--AUAGaCCGUCGC-----CUAGCAC- -5'
20361 3' -55.6 NC_004687.1 + 109661 0.66 0.921549
Target:  5'- aCUGCC-Cg--CUGGCGGCGGugcUCGc- -3'
miRNA:   3'- -GGCGGuGauaGACCGUCGCCu--AGCac -5'
20361 3' -55.6 NC_004687.1 + 110743 0.67 0.903868
Target:  5'- gCCGCCGCguUGUC-GGCGG-GGGUUGa- -3'
miRNA:   3'- -GGCGGUG--AUAGaCCGUCgCCUAGCac -5'
20361 3' -55.6 NC_004687.1 + 87385 0.67 0.897507
Target:  5'- gCCGCCACU-UCUGGUcGCGccaGAUCu-- -3'
miRNA:   3'- -GGCGGUGAuAGACCGuCGC---CUAGcac -5'
20361 3' -55.6 NC_004687.1 + 139363 0.67 0.884099
Target:  5'- gCGCUugUAgUCguccagGGCAGCGGcgCGg- -3'
miRNA:   3'- gGCGGugAU-AGa-----CCGUCGCCuaGCac -5'
20361 3' -55.6 NC_004687.1 + 51533 0.67 0.87706
Target:  5'- aCGCUGCUGgaagCU-GCAGCGGucuccuaccgcGUCGUGg -3'
miRNA:   3'- gGCGGUGAUa---GAcCGUCGCC-----------UAGCAC- -5'
20361 3' -55.6 NC_004687.1 + 145543 0.68 0.862336
Target:  5'- uCUGCUcgguCUugAUCUGGCccAGCGGAUUGUa -3'
miRNA:   3'- -GGCGGu---GA--UAGACCG--UCGCCUAGCAc -5'
20361 3' -55.6 NC_004687.1 + 77052 0.68 0.838717
Target:  5'- cCCGgCACcaggUUGGuCGGCGGaAUCGUGg -3'
miRNA:   3'- -GGCgGUGaua-GACC-GUCGCC-UAGCAC- -5'
20361 3' -55.6 NC_004687.1 + 63675 0.68 0.830462
Target:  5'- uCCGCC-CUcgCUcugagGGCGGCGGGgagCGUc -3'
miRNA:   3'- -GGCGGuGAuaGA-----CCGUCGCCUa--GCAc -5'
20361 3' -55.6 NC_004687.1 + 136280 0.69 0.795725
Target:  5'- -aGUCACgagGUCgagGGC-GUGGGUCGUGa -3'
miRNA:   3'- ggCGGUGa--UAGa--CCGuCGCCUAGCAC- -5'
20361 3' -55.6 NC_004687.1 + 14148 0.69 0.786653
Target:  5'- -gGCCACccaCUGGguGCGGGUUGg- -3'
miRNA:   3'- ggCGGUGauaGACCguCGCCUAGCac -5'
20361 3' -55.6 NC_004687.1 + 104956 0.69 0.777442
Target:  5'- gUCGCCGCcagGUCgaGGCgguugaGGCGGAUgGUGa -3'
miRNA:   3'- -GGCGGUGa--UAGa-CCG------UCGCCUAgCAC- -5'
20361 3' -55.6 NC_004687.1 + 97111 0.7 0.749071
Target:  5'- aCCGCCcagGUgUGGguCGGCGGGUCGUa -3'
miRNA:   3'- -GGCGGugaUAgACC--GUCGCCUAGCAc -5'
20361 3' -55.6 NC_004687.1 + 67947 0.71 0.709856
Target:  5'- gCCGaCCACga--UGcGCAGCGGGUCGa- -3'
miRNA:   3'- -GGC-GGUGauagAC-CGUCGCCUAGCac -5'
20361 3' -55.6 NC_004687.1 + 120405 0.71 0.679723
Target:  5'- -aGCUGCUGg--GGCAGUGGAUCGa- -3'
miRNA:   3'- ggCGGUGAUagaCCGUCGCCUAGCac -5'
20361 3' -55.6 NC_004687.1 + 9511 0.71 0.66959
Target:  5'- aCCGgCGCUGUC-GGCAGCGGccagCGg- -3'
miRNA:   3'- -GGCgGUGAUAGaCCGUCGCCua--GCac -5'
20361 3' -55.6 NC_004687.1 + 28786 0.73 0.578
Target:  5'- gCGCCGCcagCUGGuCGGCGGGUCcUGg -3'
miRNA:   3'- gGCGGUGauaGACC-GUCGCCUAGcAC- -5'
20361 3' -55.6 NC_004687.1 + 141672 1.11 0.00234
Target:  5'- aCCGCCACUAUCUGGCAGCGGAUCGUGg -3'
miRNA:   3'- -GGCGGUGAUAGACCGUCGCCUAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.