miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20365 3' -53.4 NC_004687.1 + 114183 0.66 0.974754
Target:  5'- cGGUCgGgcaucgGGACGUCGAUgGCGUCAc -3'
miRNA:   3'- -CUAGgCaca---CCUGCGGCUGaUGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 6073 0.66 0.974754
Target:  5'- cGGUCCGUG-GuGACGgaGAcCUGCAUCc -3'
miRNA:   3'- -CUAGGCACaC-CUGCggCU-GAUGUAGu -5'
20365 3' -53.4 NC_004687.1 + 87746 0.66 0.972032
Target:  5'- --cCCGcagcUGGGCGCCGACgccugguucgGCGUCGa -3'
miRNA:   3'- cuaGGCac--ACCUGCGGCUGa---------UGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 122030 0.66 0.965967
Target:  5'- cGAgCCGUucGUGGACGCCGA----GUCAc -3'
miRNA:   3'- -CUaGGCA--CACCUGCGGCUgaugUAGU- -5'
20365 3' -53.4 NC_004687.1 + 138839 0.66 0.965967
Target:  5'- cGAUCCGc-UGG-CGCCGGaggACAUCGg -3'
miRNA:   3'- -CUAGGCacACCuGCGGCUga-UGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 78840 0.67 0.95903
Target:  5'- --gCCGgcGUGGACGaCGACggugGCGUCGg -3'
miRNA:   3'- cuaGGCa-CACCUGCgGCUGa---UGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 116407 0.67 0.95903
Target:  5'- -uUCaacGUGGuCGCCGACUACGUg- -3'
miRNA:   3'- cuAGgcaCACCuGCGGCUGAUGUAgu -5'
20365 3' -53.4 NC_004687.1 + 70441 0.67 0.951179
Target:  5'- aGUUCG-GUGGACuUCGACgGCAUCAg -3'
miRNA:   3'- cUAGGCaCACCUGcGGCUGaUGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 154257 0.67 0.9469
Target:  5'- gGAUgCGUGcUGG-CGCUGAUguggUGCAUCAg -3'
miRNA:   3'- -CUAgGCAC-ACCuGCGGCUG----AUGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 76706 0.67 0.94238
Target:  5'- cGAUCCGUGccGGACaGCCcg--ACAUCAa -3'
miRNA:   3'- -CUAGGCACa-CCUG-CGGcugaUGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 146580 0.68 0.916117
Target:  5'- uGUCCGgcccGGACaGCCuGCUGCGUCAg -3'
miRNA:   3'- cUAGGCaca-CCUG-CGGcUGAUGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 17544 0.68 0.910128
Target:  5'- --cUCGUcGUGGGCGCCGuCUACGa-- -3'
miRNA:   3'- cuaGGCA-CACCUGCGGCuGAUGUagu -5'
20365 3' -53.4 NC_004687.1 + 17693 0.69 0.897424
Target:  5'- cGUCCGUccGGuCGCCGACcucaACGUCAc -3'
miRNA:   3'- cUAGGCAcaCCuGCGGCUGa---UGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 132340 0.7 0.861583
Target:  5'- -cUCgCGUGUGGugGCCGAUcggcGCcgCAa -3'
miRNA:   3'- cuAG-GCACACCugCGGCUGa---UGuaGU- -5'
20365 3' -53.4 NC_004687.1 + 105374 0.7 0.845716
Target:  5'- --cCUGagcaagGUGGGCGgCGACUACGUCGc -3'
miRNA:   3'- cuaGGCa-----CACCUGCgGCUGAUGUAGU- -5'
20365 3' -53.4 NC_004687.1 + 129792 0.71 0.784317
Target:  5'- cGGUCCGU-UGGACuugccgugcacuGCCGugUACAUCc -3'
miRNA:   3'- -CUAGGCAcACCUG------------CGGCugAUGUAGu -5'
20365 3' -53.4 NC_004687.1 + 142402 1.09 0.005117
Target:  5'- cGAUCCGUGUGGACGCCGACUACAUCAa -3'
miRNA:   3'- -CUAGGCACACCUGCGGCUGAUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.