miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20365 5' -60.9 NC_004687.1 + 110579 0.66 0.695795
Target:  5'- uGUUGCUGGccgGGGUGCC-CCC-GGUc -3'
miRNA:   3'- -CAACGACUccaCCCGCGGuGGGaCCA- -5'
20365 5' -60.9 NC_004687.1 + 104040 0.66 0.675969
Target:  5'- -cUGcCUGAGGaGGGCGCCcaggccggGCCCUa-- -3'
miRNA:   3'- caAC-GACUCCaCCCGCGG--------UGGGAcca -5'
20365 5' -60.9 NC_004687.1 + 5855 0.66 0.665999
Target:  5'- --gGCUcAGGUgaccggaguccGGGCGCCgaugaccaagGCCCUGGa -3'
miRNA:   3'- caaCGAcUCCA-----------CCCGCGG----------UGGGACCa -5'
20365 5' -60.9 NC_004687.1 + 60699 0.66 0.656004
Target:  5'- --gGCUGGuGGgagaGGGUGgauucgaaCCACCCUGGUc -3'
miRNA:   3'- caaCGACU-CCa---CCCGC--------GGUGGGACCA- -5'
20365 5' -60.9 NC_004687.1 + 17100 0.66 0.656004
Target:  5'- -gUGCUGAGGagUGGacCGCacugGCCCUGGa -3'
miRNA:   3'- caACGACUCC--ACCc-GCGg---UGGGACCa -5'
20365 5' -60.9 NC_004687.1 + 136634 0.66 0.64599
Target:  5'- -gUGCgGGGcGUGGGUGgCGCCgaGGUu -3'
miRNA:   3'- caACGaCUC-CACCCGCgGUGGgaCCA- -5'
20365 5' -60.9 NC_004687.1 + 75028 0.67 0.625939
Target:  5'- cGUUGgUGAaguacaGGUuGGUGCCGCCCUcgGGUa -3'
miRNA:   3'- -CAACgACU------CCAcCCGCGGUGGGA--CCA- -5'
20365 5' -60.9 NC_004687.1 + 120106 0.67 0.615916
Target:  5'- --cGCUGGGGUGGcauccagccacgGCGucCCGCCCggcggGGUg -3'
miRNA:   3'- caaCGACUCCACC------------CGC--GGUGGGa----CCA- -5'
20365 5' -60.9 NC_004687.1 + 136586 0.67 0.585946
Target:  5'- --cGCUGGGGuUGuGGCGCUggACCC-GGUc -3'
miRNA:   3'- caaCGACUCC-AC-CCGCGG--UGGGaCCA- -5'
20365 5' -60.9 NC_004687.1 + 81795 0.68 0.560199
Target:  5'- -aUGCUGGuGGgcucugagcgcgucGuGGCGCCACUCUGGg -3'
miRNA:   3'- caACGACU-CCa-------------C-CCGCGGUGGGACCa -5'
20365 5' -60.9 NC_004687.1 + 87369 0.68 0.556264
Target:  5'- --gGCuUGAGGcccGGGUGCCGCCacuuCUGGUc -3'
miRNA:   3'- caaCG-ACUCCa--CCCGCGGUGG----GACCA- -5'
20365 5' -60.9 NC_004687.1 + 40861 0.68 0.556264
Target:  5'- -gUGCcGGGGUGGGCGguCCGgCCUGa- -3'
miRNA:   3'- caACGaCUCCACCCGC--GGUgGGACca -5'
20365 5' -60.9 NC_004687.1 + 15675 0.68 0.546462
Target:  5'- aUUGCUggcccGAGGUGGauGCGaCCGCCgaGGUg -3'
miRNA:   3'- cAACGA-----CUCCACC--CGC-GGUGGgaCCA- -5'
20365 5' -60.9 NC_004687.1 + 54430 0.68 0.536716
Target:  5'- --aGCUgGAGGcGaGGauCGCCGCCCUGGa -3'
miRNA:   3'- caaCGA-CUCCaC-CC--GCGGUGGGACCa -5'
20365 5' -60.9 NC_004687.1 + 87739 0.69 0.489
Target:  5'- --cGCUGGGcccgcagcUGGGCGCCgACgCCUGGUu -3'
miRNA:   3'- caaCGACUCc-------ACCCGCGG-UG-GGACCA- -5'
20365 5' -60.9 NC_004687.1 + 80549 0.7 0.431895
Target:  5'- gGUUGCccuccuUGAuGGUGGGCcagaucucgucccaGUCGCCCUGGa -3'
miRNA:   3'- -CAACG------ACU-CCACCCG--------------CGGUGGGACCa -5'
20365 5' -60.9 NC_004687.1 + 116979 0.71 0.383736
Target:  5'- -gUGCgcGGGGUGGGCGUgCACCCggcGGg -3'
miRNA:   3'- caACGa-CUCCACCCGCG-GUGGGa--CCa -5'
20365 5' -60.9 NC_004687.1 + 43340 0.73 0.273761
Target:  5'- --gGCUGGGGcgagcugcagaaGGGCGCCAgCCUGGa -3'
miRNA:   3'- caaCGACUCCa-----------CCCGCGGUgGGACCa -5'
20365 5' -60.9 NC_004687.1 + 50110 0.74 0.268733
Target:  5'- --aGCUcGGGGUccuugcGGGCGCCACCCUcgcgGGUg -3'
miRNA:   3'- caaCGA-CUCCA------CCCGCGGUGGGA----CCA- -5'
20365 5' -60.9 NC_004687.1 + 142436 1.06 0.001496
Target:  5'- gGUUGCUGAGGUGGGCGCCACCCUGGUc -3'
miRNA:   3'- -CAACGACUCCACCCGCGGUGGGACCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.