miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20368 3' -52.8 NC_004687.1 + 2133 0.66 0.964087
Target:  5'- uGUCcgGCCUGAGAGccacc-GUUGUGGCg -3'
miRNA:   3'- -UAG--UGGACUCUCcucaaaCGACACCG- -5'
20368 3' -52.8 NC_004687.1 + 125817 0.67 0.956731
Target:  5'- gAUCACCUGGuuGAGGcaccUGUUgGUGGCa -3'
miRNA:   3'- -UAGUGGACU--CUCCucaaACGA-CACCG- -5'
20368 3' -52.8 NC_004687.1 + 6978 0.67 0.953108
Target:  5'- uGUCAUCUGGccucgucgaaguGGGGAGgcgacgaguacaaGCUGUGGCc -3'
miRNA:   3'- -UAGUGGACU------------CUCCUCaaa----------CGACACCG- -5'
20368 3' -52.8 NC_004687.1 + 41170 0.67 0.948409
Target:  5'- cUCACCcuUGGGAGuGAGgaUGUacuggGUGGCc -3'
miRNA:   3'- uAGUGG--ACUCUC-CUCaaACGa----CACCG- -5'
20368 3' -52.8 NC_004687.1 + 10974 0.67 0.93405
Target:  5'- -cCugCUGAGcAGGGGUggacGCUGcUGGUc -3'
miRNA:   3'- uaGugGACUC-UCCUCAaa--CGAC-ACCG- -5'
20368 3' -52.8 NC_004687.1 + 42697 0.67 0.93405
Target:  5'- -gCGCCUGGGAGGccuccUGUUG-GGCg -3'
miRNA:   3'- uaGUGGACUCUCCucaa-ACGACaCCG- -5'
20368 3' -52.8 NC_004687.1 + 46313 0.68 0.922632
Target:  5'- -cCGCCUagaagaaGAGAGGAGg-UGUcGUGGCu -3'
miRNA:   3'- uaGUGGA-------CUCUCCUCaaACGaCACCG- -5'
20368 3' -52.8 NC_004687.1 + 84593 0.69 0.877254
Target:  5'- -cCACCUGAGccccGGccacagGCUGUGGCg -3'
miRNA:   3'- uaGUGGACUCu---CCucaaa-CGACACCG- -5'
20368 3' -52.8 NC_004687.1 + 98536 0.7 0.853961
Target:  5'- cAUCACCUu-GAGGGucUUGUUGUGGUu -3'
miRNA:   3'- -UAGUGGAcuCUCCUcaAACGACACCG- -5'
20368 3' -52.8 NC_004687.1 + 20029 0.71 0.792449
Target:  5'- gAUCACCUGGGAGGAcaccgaGCaGUGGg -3'
miRNA:   3'- -UAGUGGACUCUCCUcaaa--CGaCACCg -5'
20368 3' -52.8 NC_004687.1 + 143077 1.09 0.004781
Target:  5'- cAUCACCUGAGAGGAGUUUGCUGUGGCc -3'
miRNA:   3'- -UAGUGGACUCUCCUCAAACGACACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.