miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2037 3' -58.3 NC_001347.2 + 144567 0.66 0.902362
Target:  5'- uCAGAggaauAACGGUggCGGCGG-CCGGGCUc- -3'
miRNA:   3'- -GUCU-----UUGUCG--GCCGCCaGGCUCGGug -5'
2037 3' -58.3 NC_001347.2 + 197470 0.66 0.889756
Target:  5'- uGGAAGCuGCUGGUGGUgacCCaGGGUCAg -3'
miRNA:   3'- gUCUUUGuCGGCCGCCA---GG-CUCGGUg -5'
2037 3' -58.3 NC_001347.2 + 129890 0.66 0.889756
Target:  5'- uGGAGACGGUgGGCGGcaUgCGucAGCUACu -3'
miRNA:   3'- gUCUUUGUCGgCCGCC--AgGC--UCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 225904 0.66 0.883136
Target:  5'- gGGGAACGGgUCGGCGG-CCG-GUCGg -3'
miRNA:   3'- gUCUUUGUC-GGCCGCCaGGCuCGGUg -5'
2037 3' -58.3 NC_001347.2 + 208672 0.66 0.883136
Target:  5'- cCAGGucGCAGga-GCGGUCCGAGUgGCg -3'
miRNA:   3'- -GUCUu-UGUCggcCGCCAGGCUCGgUG- -5'
2037 3' -58.3 NC_001347.2 + 4561 0.66 0.883136
Target:  5'- uCGGGAcgauACAgGCCGGCGGguaaggcgUCgGAGCCcCg -3'
miRNA:   3'- -GUCUU----UGU-CGGCCGCC--------AGgCUCGGuG- -5'
2037 3' -58.3 NC_001347.2 + 63069 0.66 0.876309
Target:  5'- gCGGAgGACuGCCGGCgGGUgUGGGCUcgGCa -3'
miRNA:   3'- -GUCU-UUGuCGGCCG-CCAgGCUCGG--UG- -5'
2037 3' -58.3 NC_001347.2 + 200135 0.66 0.876309
Target:  5'- aAGAuACAGCCucgGGCGcggaaaguGUCCucGCCACg -3'
miRNA:   3'- gUCUuUGUCGG---CCGC--------CAGGcuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 38393 0.66 0.876309
Target:  5'- -------cGCCGGCGGccuccgucUCCGuGCCGCu -3'
miRNA:   3'- gucuuuguCGGCCGCC--------AGGCuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 185919 0.66 0.876309
Target:  5'- uCAGGAA-AGCgCGGCGGUCC-AGCaACu -3'
miRNA:   3'- -GUCUUUgUCG-GCCGCCAGGcUCGgUG- -5'
2037 3' -58.3 NC_001347.2 + 209740 0.66 0.86928
Target:  5'- -cGGAGCAccguggguGCCGGCGGUaugaCG-GCCAg -3'
miRNA:   3'- guCUUUGU--------CGGCCGCCAg---GCuCGGUg -5'
2037 3' -58.3 NC_001347.2 + 82545 0.66 0.86928
Target:  5'- aCAGcacgcaccuCAGCCGGCGGUagaCG-GUCACc -3'
miRNA:   3'- -GUCuuu------GUCGGCCGCCAg--GCuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 154912 0.67 0.854634
Target:  5'- -cGAAGC-GCCGGCgGGUCCuacguuGCUACu -3'
miRNA:   3'- guCUUUGuCGGCCG-CCAGGcu----CGGUG- -5'
2037 3' -58.3 NC_001347.2 + 162166 0.67 0.847027
Target:  5'- uGGAAGuCGGCgGGCGGgggcgugaUCCGAcCCGCc -3'
miRNA:   3'- gUCUUU-GUCGgCCGCC--------AGGCUcGGUG- -5'
2037 3' -58.3 NC_001347.2 + 37063 0.67 0.847027
Target:  5'- -cGGAGguGCUGGCGG-CCGuGGCCu- -3'
miRNA:   3'- guCUUUguCGGCCGCCaGGC-UCGGug -5'
2037 3' -58.3 NC_001347.2 + 17100 0.67 0.846257
Target:  5'- aGGAAACGacggccgcgccauGCCGGUcGUCCGccgucGGCCGCc -3'
miRNA:   3'- gUCUUUGU-------------CGGCCGcCAGGC-----UCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 65877 0.67 0.83924
Target:  5'- ---cGGCAcGCUGGCGGgCCGAccGCCGCc -3'
miRNA:   3'- gucuUUGU-CGGCCGCCaGGCU--CGGUG- -5'
2037 3' -58.3 NC_001347.2 + 196139 0.67 0.831278
Target:  5'- uCGGccGCugccuGCCGGCGGcCCuGuGCCGCg -3'
miRNA:   3'- -GUCuuUGu----CGGCCGCCaGG-CuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 157297 0.67 0.831278
Target:  5'- cCAGcAGCAGCUGGUGcaUCaCGuGCCACg -3'
miRNA:   3'- -GUCuUUGUCGGCCGCc-AG-GCuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 177592 0.67 0.831278
Target:  5'- gAGAAcucGgAGaCCGaGCGGUCCGuggacuugguGGCCGCg -3'
miRNA:   3'- gUCUU---UgUC-GGC-CGCCAGGC----------UCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.