Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2037 | 3' | -58.3 | NC_001347.2 | + | 67028 | 0.78 | 0.286636 |
Target: 5'- gCGGAGACAGCugCGGCGGUCCucGCgACg -3' miRNA: 3'- -GUCUUUGUCG--GCCGCCAGGcuCGgUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 39282 | 0.74 | 0.465089 |
Target: 5'- -uGAGACAGCaacaGGCGcUCCGGGCCGu -3' miRNA: 3'- guCUUUGUCGg---CCGCcAGGCUCGGUg -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 159278 | 0.72 | 0.558672 |
Target: 5'- -cGAAACugguGCUGGCGGcgCCGGgcGCCACg -3' miRNA: 3'- guCUUUGu---CGGCCGCCa-GGCU--CGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 142950 | 0.72 | 0.558672 |
Target: 5'- uCAGAcACAGCCGGUcaucUCCGAGCCc- -3' miRNA: 3'- -GUCUuUGUCGGCCGcc--AGGCUCGGug -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 73704 | 0.72 | 0.597691 |
Target: 5'- gAGAAGgGGCCGG-GGUCCGcgggcaccGCCGCc -3' miRNA: 3'- gUCUUUgUCGGCCgCCAGGCu-------CGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 2021 | 0.72 | 0.597691 |
Target: 5'- aCGGAGGCcGCCGGCGGggaCGcGCCGu -3' miRNA: 3'- -GUCUUUGuCGGCCGCCag-GCuCGGUg -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 13511 | 0.72 | 0.597691 |
Target: 5'- cCGGguGCucacccGCCgGGCGGcCCGGGCCGCc -3' miRNA: 3'- -GUCuuUGu-----CGG-CCGCCaGGCUCGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 1721 | 0.71 | 0.60752 |
Target: 5'- aCGGGAGCugcGCCGGCGGU--GGGCCGg -3' miRNA: 3'- -GUCUUUGu--CGGCCGCCAggCUCGGUg -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 111659 | 0.71 | 0.627222 |
Target: 5'- gCAGAcaucAGCAGCaCGuuGCGGUCCGugcccgcGCCACg -3' miRNA: 3'- -GUCU----UUGUCG-GC--CGCCAGGCu------CGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 85953 | 0.7 | 0.692991 |
Target: 5'- -cGAGAC-GCCGGCGcgcgaacccguguaGUgCGAGCCGCc -3' miRNA: 3'- guCUUUGuCGGCCGC--------------CAgGCUCGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 110121 | 0.7 | 0.70558 |
Target: 5'- uCGGAAGCGGCCGcgaucaGCGaGgCCGAaGCCGCc -3' miRNA: 3'- -GUCUUUGUCGGC------CGC-CaGGCU-CGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 136004 | 0.69 | 0.752934 |
Target: 5'- gAGGGACccCCGGCcgaGGUCCGgagcgGGCCGCg -3' miRNA: 3'- gUCUUUGucGGCCG---CCAGGC-----UCGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 66572 | 0.69 | 0.752934 |
Target: 5'- gAGGAACGagggcccucGCCGGCGG-CCGuuGCCGg -3' miRNA: 3'- gUCUUUGU---------CGGCCGCCaGGCu-CGGUg -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 76607 | 0.68 | 0.771242 |
Target: 5'- gAGAGguccucGCAGgCGGCGG-CUGcGGCCGCg -3' miRNA: 3'- gUCUU------UGUCgGCCGCCaGGC-UCGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 165870 | 0.68 | 0.771242 |
Target: 5'- gCAGGGACaccgaugucgAGCCGGCGGg-CGGGUCGa -3' miRNA: 3'- -GUCUUUG----------UCGGCCGCCagGCUCGGUg -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 138103 | 0.68 | 0.780227 |
Target: 5'- -cGAGuACGuGUCGGgGGUCUGuGCCGCg -3' miRNA: 3'- guCUU-UGU-CGGCCgCCAGGCuCGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 104651 | 0.68 | 0.789089 |
Target: 5'- uGGGccucGCaAGCCGGCuGUCUGAGCgACg -3' miRNA: 3'- gUCUu---UG-UCGGCCGcCAGGCUCGgUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 100874 | 0.68 | 0.789968 |
Target: 5'- -cGAGGCGGCgCGGCGcagcgccggccauucUCCGGGUCGCg -3' miRNA: 3'- guCUUUGUCG-GCCGCc--------------AGGCUCGGUG- -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 135359 | 0.68 | 0.806412 |
Target: 5'- gCGGAccGAgAGCCGGCGG-CUaGGCCGa -3' miRNA: 3'- -GUCU--UUgUCGGCCGCCaGGcUCGGUg -5' |
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2037 | 3' | -58.3 | NC_001347.2 | + | 179977 | 0.68 | 0.814857 |
Target: 5'- gAGAAACcGCCGuuCGGcucuccUCCGAGCCAa -3' miRNA: 3'- gUCUUUGuCGGCc-GCC------AGGCUCGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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