miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2037 3' -58.3 NC_001347.2 + 1721 0.71 0.60752
Target:  5'- aCGGGAGCugcGCCGGCGGU--GGGCCGg -3'
miRNA:   3'- -GUCUUUGu--CGGCCGCCAggCUCGGUg -5'
2037 3' -58.3 NC_001347.2 + 2021 0.72 0.597691
Target:  5'- aCGGAGGCcGCCGGCGGggaCGcGCCGu -3'
miRNA:   3'- -GUCUUUGuCGGCCGCCag-GCuCGGUg -5'
2037 3' -58.3 NC_001347.2 + 4561 0.66 0.883136
Target:  5'- uCGGGAcgauACAgGCCGGCGGguaaggcgUCgGAGCCcCg -3'
miRNA:   3'- -GUCUU----UGU-CGGCCGCC--------AGgCUCGGuG- -5'
2037 3' -58.3 NC_001347.2 + 13511 0.72 0.597691
Target:  5'- cCGGguGCucacccGCCgGGCGGcCCGGGCCGCc -3'
miRNA:   3'- -GUCuuUGu-----CGG-CCGCCaGGCUCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 15551 0.68 0.814857
Target:  5'- uGGAAGCAGCCGaGCG---CGAGgCCGCu -3'
miRNA:   3'- gUCUUUGUCGGC-CGCcagGCUC-GGUG- -5'
2037 3' -58.3 NC_001347.2 + 17100 0.67 0.846257
Target:  5'- aGGAAACGacggccgcgccauGCCGGUcGUCCGccgucGGCCGCc -3'
miRNA:   3'- gUCUUUGU-------------CGGCCGcCAGGC-----UCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 37063 0.67 0.847027
Target:  5'- -cGGAGguGCUGGCGG-CCGuGGCCu- -3'
miRNA:   3'- guCUUUguCGGCCGCCaGGC-UCGGug -5'
2037 3' -58.3 NC_001347.2 + 38393 0.66 0.876309
Target:  5'- -------cGCCGGCGGccuccgucUCCGuGCCGCu -3'
miRNA:   3'- gucuuuguCGGCCGCC--------AGGCuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 39282 0.74 0.465089
Target:  5'- -uGAGACAGCaacaGGCGcUCCGGGCCGu -3'
miRNA:   3'- guCUUUGUCGg---CCGCcAGGCUCGGUg -5'
2037 3' -58.3 NC_001347.2 + 63069 0.66 0.876309
Target:  5'- gCGGAgGACuGCCGGCgGGUgUGGGCUcgGCa -3'
miRNA:   3'- -GUCU-UUGuCGGCCG-CCAgGCUCGG--UG- -5'
2037 3' -58.3 NC_001347.2 + 65877 0.67 0.83924
Target:  5'- ---cGGCAcGCUGGCGGgCCGAccGCCGCc -3'
miRNA:   3'- gucuUUGU-CGGCCGCCaGGCU--CGGUG- -5'
2037 3' -58.3 NC_001347.2 + 66572 0.69 0.752934
Target:  5'- gAGGAACGagggcccucGCCGGCGG-CCGuuGCCGg -3'
miRNA:   3'- gUCUUUGU---------CGGCCGCCaGGCu-CGGUg -5'
2037 3' -58.3 NC_001347.2 + 66906 0.68 0.814857
Target:  5'- gAGGAGCAGCUGGUGuUUCGAuuGCgGCg -3'
miRNA:   3'- gUCUUUGUCGGCCGCcAGGCU--CGgUG- -5'
2037 3' -58.3 NC_001347.2 + 67028 0.78 0.286636
Target:  5'- gCGGAGACAGCugCGGCGGUCCucGCgACg -3'
miRNA:   3'- -GUCUUUGUCG--GCCGCCAGGcuCGgUG- -5'
2037 3' -58.3 NC_001347.2 + 73704 0.72 0.597691
Target:  5'- gAGAAGgGGCCGG-GGUCCGcgggcaccGCCGCc -3'
miRNA:   3'- gUCUUUgUCGGCCgCCAGGCu-------CGGUG- -5'
2037 3' -58.3 NC_001347.2 + 76607 0.68 0.771242
Target:  5'- gAGAGguccucGCAGgCGGCGG-CUGcGGCCGCg -3'
miRNA:   3'- gUCUU------UGUCgGCCGCCaGGC-UCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 82545 0.66 0.86928
Target:  5'- aCAGcacgcaccuCAGCCGGCGGUagaCG-GUCACc -3'
miRNA:   3'- -GUCuuu------GUCGGCCGCCAg--GCuCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 85953 0.7 0.692991
Target:  5'- -cGAGAC-GCCGGCGcgcgaacccguguaGUgCGAGCCGCc -3'
miRNA:   3'- guCUUUGuCGGCCGC--------------CAgGCUCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 100874 0.68 0.789968
Target:  5'- -cGAGGCGGCgCGGCGcagcgccggccauucUCCGGGUCGCg -3'
miRNA:   3'- guCUUUGUCG-GCCGCc--------------AGGCUCGGUG- -5'
2037 3' -58.3 NC_001347.2 + 104651 0.68 0.789089
Target:  5'- uGGGccucGCaAGCCGGCuGUCUGAGCgACg -3'
miRNA:   3'- gUCUu---UG-UCGGCCGcCAGGCUCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.