Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2037 | 5' | -57.3 | NC_001347.2 | + | 229204 | 0.66 | 0.928346 |
Target: 5'- -aACAGCCCCGGCC-CCa-------- -3' miRNA: 3'- agUGUCGGGGCCGGcGGcuaucaaug -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 6139 | 0.66 | 0.928346 |
Target: 5'- gUCACcGCUacuCUGGCCGCUGcUAGUgcUACu -3' miRNA: 3'- -AGUGuCGG---GGCCGGCGGCuAUCA--AUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 126642 | 0.66 | 0.928346 |
Target: 5'- gCACGGCgCUGGCaCGCgCGc-GGUUGCu -3' miRNA: 3'- aGUGUCGgGGCCG-GCG-GCuaUCAAUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 184497 | 0.66 | 0.927323 |
Target: 5'- -gGCGG-CCCGGCCGCCGcgccgugugagAGUUcCa -3' miRNA: 3'- agUGUCgGGGCCGGCGGCua---------UCAAuG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 63209 | 0.66 | 0.923143 |
Target: 5'- aC-CAGCCaccaCCGGCCGCUGAcgcUGuUUACg -3' miRNA: 3'- aGuGUCGG----GGCCGGCGGCU---AUcAAUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 229777 | 0.66 | 0.92261 |
Target: 5'- cCGCGGUCCCcagGGCCGucgucccucgcccCCGGgcGUUGCu -3' miRNA: 3'- aGUGUCGGGG---CCGGC-------------GGCUauCAAUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 298 | 0.66 | 0.92261 |
Target: 5'- cCGCGGUCCCcagGGCCGucgucccucgcccCCGGgcGUUGCu -3' miRNA: 3'- aGUGUCGGGG---CCGGC-------------GGCUauCAAUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 40612 | 0.66 | 0.917715 |
Target: 5'- ---uGGCCgCCGGCgaUGCCGGgguGUUGCg -3' miRNA: 3'- agugUCGG-GGCCG--GCGGCUau-CAAUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 31137 | 0.66 | 0.917715 |
Target: 5'- -gGCuGCCCUGGuuGCCGcugcgGGUaACg -3' miRNA: 3'- agUGuCGGGGCCggCGGCua---UCAaUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 154843 | 0.66 | 0.912064 |
Target: 5'- cCGCAGUUguucaaagUCGGCCGCCGA-GGUUuCg -3' miRNA: 3'- aGUGUCGG--------GGCCGGCGGCUaUCAAuG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 38015 | 0.67 | 0.900098 |
Target: 5'- gCGCGGCCUCGGCggcgggCGCCGAc------ -3' miRNA: 3'- aGUGUCGGGGCCG------GCGGCUaucaaug -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 214716 | 0.67 | 0.893786 |
Target: 5'- aUCGCGacGCCCCaGCUGCCG-UAGg--- -3' miRNA: 3'- -AGUGU--CGGGGcCGGCGGCuAUCaaug -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 4590 | 0.67 | 0.893786 |
Target: 5'- gUCGgAGCCCCGauacauGCUGCCGAcAGguaagaUGCg -3' miRNA: 3'- -AGUgUCGGGGC------CGGCGGCUaUCa-----AUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 24236 | 0.67 | 0.893786 |
Target: 5'- aUAUAGCCuCCGGCUGUC-AUGGgucUGCg -3' miRNA: 3'- aGUGUCGG-GGCCGGCGGcUAUCa--AUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 31411 | 0.67 | 0.893786 |
Target: 5'- cUCGuCGGCCUgGGCUGCUGuugGGUaACg -3' miRNA: 3'- -AGU-GUCGGGgCCGGCGGCua-UCAaUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 96916 | 0.67 | 0.880522 |
Target: 5'- aCAaAGCCCgGGCCGCCGccAGc--- -3' miRNA: 3'- aGUgUCGGGgCCGGCGGCuaUCaaug -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 98199 | 0.67 | 0.873578 |
Target: 5'- aCACAgGCCCgauguggcugCGGCCGCCGAg------ -3' miRNA: 3'- aGUGU-CGGG----------GCCGGCGGCUaucaaug -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 38186 | 0.68 | 0.859084 |
Target: 5'- gCACGGuCCCCGacGCCGCCGGa------ -3' miRNA: 3'- aGUGUC-GGGGC--CGGCGGCUaucaaug -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 157846 | 0.68 | 0.859084 |
Target: 5'- aUCGCAGCCuugcgCCGGUaCGCCGGgaaGGUacccUGCg -3' miRNA: 3'- -AGUGUCGG-----GGCCG-GCGGCUa--UCA----AUG- -5' |
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2037 | 5' | -57.3 | NC_001347.2 | + | 113294 | 0.68 | 0.851546 |
Target: 5'- cUCGC-GCUCCGucaCGCCGAcUAGUUGCu -3' miRNA: 3'- -AGUGuCGGGGCcg-GCGGCU-AUCAAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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