miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2037 5' -57.3 NC_001347.2 + 28995 0.83 0.155179
Target:  5'- cUCugGGCCCCGGUCGCgGGUAGUaUGCc -3'
miRNA:   3'- -AGugUCGGGGCCGGCGgCUAUCA-AUG- -5'
2037 5' -57.3 NC_001347.2 + 157814 0.77 0.382738
Target:  5'- -gGCAGCCgCGGUCGCCGc-AGUUGCg -3'
miRNA:   3'- agUGUCGGgGCCGGCGGCuaUCAAUG- -5'
2037 5' -57.3 NC_001347.2 + 13529 0.74 0.514634
Target:  5'- -gGCGGCCCgGGCCGCCGugcUGGa--- -3'
miRNA:   3'- agUGUCGGGgCCGGCGGCu--AUCaaug -5'
2037 5' -57.3 NC_001347.2 + 53734 0.73 0.552006
Target:  5'- gUCACAGCCgCGuGCCGCgGGUGcgcgcagaagaauGUUGCg -3'
miRNA:   3'- -AGUGUCGGgGC-CGGCGgCUAU-------------CAAUG- -5'
2037 5' -57.3 NC_001347.2 + 113178 0.72 0.621799
Target:  5'- aCGCGcGCCCCaGCCGCCGGcgUGGcgGCc -3'
miRNA:   3'- aGUGU-CGGGGcCGGCGGCU--AUCaaUG- -5'
2037 5' -57.3 NC_001347.2 + 169116 0.7 0.718123
Target:  5'- aCACGGCCUCGGCCGCgCGcgccgcgcUGCa -3'
miRNA:   3'- aGUGUCGGGGCCGGCG-GCuauca---AUG- -5'
2037 5' -57.3 NC_001347.2 + 156645 0.7 0.720045
Target:  5'- cCGCugccgGGCCUCGGCCGCCGccgccacccAUGGcgGCg -3'
miRNA:   3'- aGUG-----UCGGGGCCGGCGGC---------UAUCaaUG- -5'
2037 5' -57.3 NC_001347.2 + 159453 0.7 0.729616
Target:  5'- -uGCGGCCgCGGCCGCuCGAUGa---- -3'
miRNA:   3'- agUGUCGGgGCCGGCG-GCUAUcaaug -5'
2037 5' -57.3 NC_001347.2 + 195659 0.7 0.739106
Target:  5'- gUCGCAcGCCCgaggaucuggCGGCCGCCGGcGGUc-- -3'
miRNA:   3'- -AGUGU-CGGG----------GCCGGCGGCUaUCAaug -5'
2037 5' -57.3 NC_001347.2 + 2090 0.69 0.776111
Target:  5'- cCGCAGCCguaCGgcGCCGCCGGcGGggGCg -3'
miRNA:   3'- aGUGUCGGg--GC--CGGCGGCUaUCaaUG- -5'
2037 5' -57.3 NC_001347.2 + 186624 0.69 0.785081
Target:  5'- gCACAGCCaCUGGuuGCUGAg---UACg -3'
miRNA:   3'- aGUGUCGG-GGCCggCGGCUaucaAUG- -5'
2037 5' -57.3 NC_001347.2 + 92254 0.69 0.785081
Target:  5'- cCGCAgGCCgUGGCCGCCGccaugAGgcGCg -3'
miRNA:   3'- aGUGU-CGGgGCCGGCGGCua---UCaaUG- -5'
2037 5' -57.3 NC_001347.2 + 196155 0.69 0.793921
Target:  5'- -gGCGGCCCUGuGCCGCg---GGUUGCc -3'
miRNA:   3'- agUGUCGGGGC-CGGCGgcuaUCAAUG- -5'
2037 5' -57.3 NC_001347.2 + 200138 0.69 0.802625
Target:  5'- aUACAGCCUCGGgCGCgGAaAGUg-- -3'
miRNA:   3'- aGUGUCGGGGCCgGCGgCUaUCAaug -5'
2037 5' -57.3 NC_001347.2 + 149910 0.69 0.811184
Target:  5'- aCACAGCCCC-GCCGUgGGUuuuaAGcgGCa -3'
miRNA:   3'- aGUGUCGGGGcCGGCGgCUA----UCaaUG- -5'
2037 5' -57.3 NC_001347.2 + 142705 0.68 0.81959
Target:  5'- gUCGCAGCCCCguGGCCGCUu-------- -3'
miRNA:   3'- -AGUGUCGGGG--CCGGCGGcuaucaaug -5'
2037 5' -57.3 NC_001347.2 + 34689 0.68 0.827836
Target:  5'- cUCGguGCCCCGGCCcCUGGaugUGGUg-- -3'
miRNA:   3'- -AGUguCGGGGCCGGcGGCU---AUCAaug -5'
2037 5' -57.3 NC_001347.2 + 113630 0.68 0.835915
Target:  5'- gUCGCAGCgCCGGCUggagagcgagagGCCGGcgUAGcUGCc -3'
miRNA:   3'- -AGUGUCGgGGCCGG------------CGGCU--AUCaAUG- -5'
2037 5' -57.3 NC_001347.2 + 41401 0.68 0.843821
Target:  5'- cUCGgAGgCCaCGGCCGCCGuguacAGUUAg -3'
miRNA:   3'- -AGUgUCgGG-GCCGGCGGCua---UCAAUg -5'
2037 5' -57.3 NC_001347.2 + 135213 0.68 0.843821
Target:  5'- gCGCcGaCCCCGGCUgggcgGCCGAUGGggGg -3'
miRNA:   3'- aGUGuC-GGGGCCGG-----CGGCUAUCaaUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.